Variant report

Variant	rs3743213
Chromosome Location	chr15:74473496-74473497
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:74473356-74473568	A549	lung:	n/a	n/a
2	MYC	chr15:74473255-74473617	MCF10A-Er-Src	breast:	n/a	chr15:74473400-74473419 chr15:74473456-74473472 chr15:74473404-74473415 chr15:74473404-74473415 chr15:74473405-74473414 chr15:74473405-74473415 chr15:74473404-74473415 chr15:74473405-74473414 chr15:74473356-74473372 chr15:74473406-74473413 chr15:74473404-74473414
3	BHLHE40	chr15:74473300-74473513	GM12878	blood:	n/a	n/a
4	MYC	chr15:74473440-74473567	MCF-7	breast:	n/a	chr15:74473456-74473472
5	MYC	chr15:74473315-74473622	MCF-7	breast:	n/a	chr15:74473400-74473419 chr15:74473456-74473472 chr15:74473404-74473415 chr15:74473404-74473415 chr15:74473405-74473414 chr15:74473405-74473415 chr15:74473404-74473415 chr15:74473405-74473414 chr15:74473356-74473372 chr15:74473406-74473413 chr15:74473404-74473414
6	MYC	chr15:74473398-74473508	MCF-7	breast:	n/a	chr15:74473400-74473419 chr15:74473456-74473472 chr15:74473404-74473415 chr15:74473404-74473415 chr15:74473405-74473414 chr15:74473405-74473415 chr15:74473404-74473415 chr15:74473405-74473414 chr15:74473406-74473413 chr15:74473404-74473414
7	MAX	chr15:74473343-74473514	GM12878	blood:	n/a	chr15:74473400-74473419 chr15:74473456-74473472 chr15:74473404-74473415 chr15:74473404-74473415 chr15:74473405-74473414 chr15:74473405-74473415 chr15:74473404-74473415 chr15:74473405-74473414 chr15:74473356-74473372 chr15:74473406-74473413 chr15:74473404-74473414
8	BHLHE40	chr15:74473238-74473591	K562	blood:	n/a	n/a
9	EBF1	chr15:74473346-74473645	GM12878	blood:	n/a	n/a
10	MAX	chr15:74473249-74473552	K562	blood:	n/a	chr15:74473400-74473419 chr15:74473456-74473472 chr15:74473404-74473415 chr15:74473404-74473415 chr15:74473405-74473414 chr15:74473405-74473415 chr15:74473404-74473415 chr15:74473405-74473414 chr15:74473356-74473372 chr15:74473406-74473413 chr15:74473404-74473414
11	POLR2A	chr15:74473081-74473519	A549	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:74471188..74474733-chr15:74480852..74485546,5	MCF-7	breast:
2	chr15:74471878..74474660-chr15:74491803..74495339,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000261543	TF binding region
ENSG00000259264	Chromatin interaction
ENSG00000137868	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs351166	1.00[AMR][1000 genomes]
rs351168	1.00[AMR][1000 genomes]
rs351194	1.00[AMR][1000 genomes]
rs57654931	1.00[AMR][1000 genomes]
rs7162874	1.00[AMR][1000 genomes]
rs7168527	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833053	chr15:74360156-74555140	Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv1050884	chr15:74394983-74489413	Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv833054	chr15:74457643-74625283	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv904345	chr15:74458181-74526596	Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv904346	chr15:74458181-74548773	Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv904347	chr15:74462629-74537101	Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv904348	chr15:74462629-74542686	Genic enhancers Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74464800-74473600	Enhancers	Right Ventricle	heart
2	chr15:74466200-74492800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr15:74466600-74480600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr15:74467200-74473600	Enhancers	Right Atrium	heart
5	chr15:74467400-74473800	Enhancers	NHDF-Ad	bronchial
6	chr15:74467800-74473600	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr15:74468400-74473600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr15:74468600-74473600	Enhancers	NH-A	brain
9	chr15:74469200-74474000	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr15:74469200-74491800	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr15:74469400-74487600	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr15:74469400-74493200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr15:74470000-74473800	Enhancers	Left Ventricle	heart
14	chr15:74470600-74473600	Enhancers	Ovary	ovary
15	chr15:74470600-74474000	Enhancers	Lung	lung
16	chr15:74470600-74475600	Weak transcription	Fetal Kidney	kidney
17	chr15:74470600-74484000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr15:74470800-74492800	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr15:74471000-74473600	Enhancers	Fetal Muscle Leg	muscle
20	chr15:74471200-74473600	Enhancers	Fetal Thymus	thymus
21	chr15:74471200-74473600	Enhancers	HMEC	breast
22	chr15:74471200-74473800	Enhancers	Spleen	Spleen
23	chr15:74471400-74473800	Enhancers	Esophagus	oesophagus
24	chr15:74471400-74475200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr15:74471800-74473600	Enhancers	Fetal Brain Female	brain
26	chr15:74471800-74478000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr15:74472000-74477400	Genic enhancers	Placenta	Placenta
28	chr15:74472200-74473600	Enhancers	Pancreas	Pancrea
29	chr15:74472200-74473600	Enhancers	GM12878-XiMat	blood
30	chr15:74472200-74474600	Strong transcription	Fetal Intestine Small	intestine
31	chr15:74472400-74473600	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr15:74472400-74473800	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr15:74472400-74473800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
34	chr15:74472400-74473800	Enhancers	Hela-S3	cervix
35	chr15:74472400-74477200	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr15:74472600-74473600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr15:74472600-74473600	Enhancers	Muscle Satellite Cultured Cells	--
38	chr15:74472600-74473600	Enhancers	Adipose Nuclei	Adipose
39	chr15:74472600-74473600	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
40	chr15:74472600-74474000	Strong transcription	HUES6 Cell Line	embryonic stem cell
41	chr15:74472800-74473600	Enhancers	Gastric	stomach
42	chr15:74473000-74474000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr15:74473000-74474200	Genic enhancers	A549	lung
44	chr15:74473200-74473600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr15:74473200-74473600	Enhancers	HSMM	muscle
46	chr15:74473200-74473800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr15:74473200-74473800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr15:74473200-74478000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr15:74473200-74478000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr15:74473400-74473600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links