Variant report

Variant	rs35122850
Chromosome Location	chr15:44630134-44630135
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs6493107	1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431387	chr15:43929378-44862930	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	158 gene(s)	inside rSNPs	diseases
2	nsv931051	chr15:43988761-44833518	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	154 gene(s)	inside rSNPs	diseases
3	nsv1052511	chr15:44266441-44719023	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
4	nsv542371	chr15:44266441-44719023	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
5	esv3410956	chr15:44425145-44823647	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
6	nsv1044686	chr15:44489534-44697482	Strong transcription Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
7	nsv1043822	chr15:44491220-44686957	Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
8	nsv1035386	chr15:44498905-44677174	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
9	nsv904177	chr15:44582886-44821843	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
10	nsv569299	chr15:44598642-44776075	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
11	nsv904178	chr15:44609796-44724287	Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
12	nsv569300	chr15:44609796-44763598	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
13	nsv904179	chr15:44614684-44821843	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:44582000-44639400	Weak transcription	Lung	lung
2	chr15:44582800-44672200	Weak transcription	HSMM	muscle
3	chr15:44583000-44639400	Weak transcription	Fetal Lung	lung
4	chr15:44583200-44639200	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr15:44583800-44639200	Weak transcription	Brain Germinal Matrix	brain
6	chr15:44589000-44631600	Weak transcription	Left Ventricle	heart
7	chr15:44589800-44632000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr15:44589800-44632400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr15:44589800-44632400	Weak transcription	NHLF	lung
10	chr15:44591400-44632800	Weak transcription	Hela-S3	cervix
11	chr15:44592800-44639800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr15:44593200-44639200	Weak transcription	K562	blood
13	chr15:44593200-44639400	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr15:44593800-44639400	Weak transcription	Primary hematopoietic stem cells	blood
15	chr15:44595200-44631600	Weak transcription	Fetal Muscle Trunk	muscle
16	chr15:44598600-44646800	Weak transcription	Right Ventricle	heart
17	chr15:44599600-44632600	Weak transcription	HSMMtube	muscle
18	chr15:44600800-44632400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr15:44601600-44638600	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr15:44602200-44638400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr15:44602400-44639400	Weak transcription	Gastric	stomach
22	chr15:44602400-44639600	Weak transcription	Pancreas	Pancrea
23	chr15:44605800-44632800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr15:44607800-44639400	Weak transcription	Placenta	Placenta
25	chr15:44608000-44639800	Weak transcription	Brain Anterior Caudate	brain
26	chr15:44608800-44639200	Weak transcription	Stomach Smooth Muscle	stomach
27	chr15:44609200-44639400	Weak transcription	Liver	Liver
28	chr15:44609800-44639600	Weak transcription	Aorta	Aorta
29	chr15:44610400-44631600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr15:44615400-44638600	Weak transcription	Brain Cingulate Gyrus	brain
31	chr15:44615400-44639600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr15:44616200-44632400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr15:44616200-44632400	Weak transcription	NHDF-Ad	bronchial
34	chr15:44616400-44639200	Weak transcription	Brain Angular Gyrus	brain
35	chr15:44616600-44639200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr15:44617800-44639000	Weak transcription	Rectal Smooth Muscle	rectum
37	chr15:44618000-44638800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr15:44618000-44639400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr15:44618000-44639600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr15:44618000-44639800	Weak transcription	HepG2	liver
41	chr15:44618000-44642600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chr15:44618000-44642800	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr15:44618000-44643200	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr15:44618200-44631600	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr15:44618200-44632600	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr15:44619000-44639600	Weak transcription	Colonic Mucosa	Colon
47	chr15:44619600-44636200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
48	chr15:44619800-44632400	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr15:44620000-44632400	Weak transcription	NH-A	brain
50	chr15:44620200-44639400	Weak transcription	A549	lung

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