Variant report

Variant	rs35126215
Chromosome Location	chr8:127847620-127847621
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs13256541	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13263103	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13263564	0.91[AFR][1000 genomes]
rs34554193	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34619157	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35507366	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35592235	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35998325	1.00[AFR][1000 genomes]
rs71518692	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs71518693	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7840654	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1819408	chr8:127835876-127898165	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv6382	chr8:127845446-127890549	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:127844400-127847800	Enhancers	Fetal Muscle Leg	muscle
2	chr8:127844400-127848000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr8:127846200-127847800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr8:127846200-127851600	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr8:127846600-127848000	Enhancers	NHLF	lung
6	chr8:127846600-127849800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr8:127846600-127849800	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr8:127846600-127851600	Weak transcription	Stomach Mucosa	stomach
9	chr8:127846600-127858200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr8:127846800-127847800	Weak transcription	Fetal Lung	lung
11	chr8:127846800-127847800	Weak transcription	NH-A	brain
12	chr8:127846800-127848000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr8:127846800-127848000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr8:127846800-127848200	Enhancers	Muscle Satellite Cultured Cells	--
15	chr8:127846800-127851000	Weak transcription	Adipose Nuclei	Adipose
16	chr8:127846800-127851200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr8:127846800-127851400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr8:127846800-127851400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr8:127846800-127851400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr8:127846800-127851400	Weak transcription	HMEC	breast
21	chr8:127846800-127851800	Weak transcription	Gastric	stomach
22	chr8:127846800-127851800	Weak transcription	NHEK	skin
23	chr8:127846800-127852200	Weak transcription	Fetal Heart	heart
24	chr8:127846800-127854000	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr8:127846800-127857200	Weak transcription	Fetal Kidney	kidney
26	chr8:127847000-127850000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr8:127847000-127850800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr8:127847000-127851400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr8:127847000-127854400	Weak transcription	Placenta	Placenta
30	chr8:127847200-127850200	Weak transcription	Fetal Muscle Trunk	muscle
31	chr8:127847600-127849800	Weak transcription	NHDF-Ad	bronchial
32	chr8:127847600-127850000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr8:127847600-127851400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr8:127847600-127857200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr8:127847600-127860000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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