Variant report

Variant	rs35592235
Chromosome Location	chr8:127861893-127861894
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs13256541	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13263103	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13263564	0.91[AFR][1000 genomes]
rs34554193	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34619157	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35126215	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35507366	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35998325	1.00[AFR][1000 genomes]
rs71518692	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs71518693	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7840654	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1819408	chr8:127835876-127898165	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv6382	chr8:127845446-127890549	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv831456	chr8:127861583-128025508	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:127857400-127862000	Weak transcription	Fetal Kidney	kidney
2	chr8:127858000-127866400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr8:127858600-127869400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr8:127861400-127862000	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr8:127861400-127862200	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr8:127861400-127862200	Enhancers	HSMMtube	muscle
7	chr8:127861400-127862800	Enhancers	Fetal Muscle Leg	muscle
8	chr8:127861800-127862000	Enhancers	Muscle Satellite Cultured Cells	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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