Variant report

Variant	rs35128733
Chromosome Location	chr10:98742334-98742335
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:98741127..98743717-chr10:98745929..98748788,2	MCF-7	breast:
2	chr10:98741871..98742756-chr10:98784734..98786018,5	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs60703199	1.00[AMR][1000 genomes]
rs7081177	1.00[AMR][1000 genomes]
rs7086735	0.97[AFR][1000 genomes]
rs7898071	1.00[AMR][1000 genomes]
rs7910909	1.00[AMR][1000 genomes]
rs7912481	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1052931	chr10:98676192-98862301	Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1042398	chr10:98691406-98851346	Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv831951	chr10:98717103-98761280	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98716600-98743200	Weak transcription	Hela-S3	cervix
2	chr10:98731800-98745600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr10:98732800-98744200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:98734000-98748400	Weak transcription	Stomach Mucosa	stomach
5	chr10:98734400-98744600	Weak transcription	NHDF-Ad	bronchial
6	chr10:98734600-98746800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr10:98738000-98743000	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr10:98738400-98744200	Weak transcription	Brain Angular Gyrus	brain
9	chr10:98738800-98744600	Strong transcription	Fetal Intestine Small	intestine
10	chr10:98739000-98742400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr10:98739200-98744200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr10:98739800-98742600	Strong transcription	Primary T cells from cord blood	blood
13	chr10:98740200-98742600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr10:98740200-98743600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr10:98740200-98743600	Strong transcription	Fetal Intestine Large	intestine
16	chr10:98740400-98742400	Strong transcription	Osteobl	bone
17	chr10:98740400-98742600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
18	chr10:98740400-98742800	Strong transcription	Primary T cells fromperipheralblood	blood
19	chr10:98740400-98743000	Strong transcription	Primary B cells from cord blood	blood
20	chr10:98740400-98743000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr10:98740400-98743200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr10:98740600-98742400	Strong transcription	HUES6 Cell Line	embryonic stem cell
23	chr10:98740600-98742400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr10:98740600-98742400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr10:98740600-98742400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr10:98740600-98742400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr10:98740600-98742400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr10:98740600-98742400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr10:98740600-98742400	Strong transcription	Adipose Nuclei	Adipose
30	chr10:98740600-98742400	Strong transcription	Brain Anterior Caudate	brain
31	chr10:98740600-98742400	Strong transcription	Duodenum Smooth Muscle	Duodenum
32	chr10:98740600-98742400	Strong transcription	Esophagus	oesophagus
33	chr10:98740600-98742400	Strong transcription	Fetal Kidney	kidney
34	chr10:98740600-98742400	Strong transcription	Sigmoid Colon	Sigmoid Colon
35	chr10:98740600-98742400	Strong transcription	Skeletal Muscle Female	skeletal muscle
36	chr10:98740600-98742400	Strong transcription	Thymus	Thymus
37	chr10:98740600-98742600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
38	chr10:98740600-98742600	Strong transcription	Primary B cells from peripheral blood	blood
39	chr10:98740600-98742600	Strong transcription	Aorta	Aorta
40	chr10:98740600-98742600	Strong transcription	Brain Hippocampus Middle	brain
41	chr10:98740600-98742600	Strong transcription	Duodenum Mucosa	Duodenum
42	chr10:98740600-98742600	Strong transcription	Lung	lung
43	chr10:98740600-98742600	Strong transcription	Rectal Mucosa Donor 29	rectum
44	chr10:98740600-98742600	Strong transcription	Rectal Mucosa Donor 31	rectum
45	chr10:98740600-98742600	Strong transcription	Skeletal Muscle Male	skeletal muscle
46	chr10:98740600-98742800	Strong transcription	Cortex derived primary cultured neurospheres	brain
47	chr10:98740600-98742800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr10:98740600-98742800	Strong transcription	Placenta	Placenta
49	chr10:98740600-98742800	Strong transcription	HSMMtube	muscle
50	chr10:98740600-98743000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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