Variant report

Variant	rs7081177
Chromosome Location	chr10:98660595-98660596
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:98659194..98661620-chr10:98670186..98671771,2	MCF-7	breast:
2	chr10:98592077..98593894-chr10:98658090..98660847,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000196233	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs35128733	1.00[AMR][1000 genomes]
rs4453153	0.89[AFR][1000 genomes]
rs60703199	1.00[AMR][1000 genomes]
rs6584105	0.86[YRI][hapmap];0.82[AFR][1000 genomes]
rs6584106	0.81[YRI][hapmap];0.80[AFR][1000 genomes]
rs7073147	0.83[AFR][1000 genomes]
rs7084507	0.86[YRI][hapmap]
rs7085209	0.82[YRI][hapmap];0.88[AFR][1000 genomes]
rs7100376	0.84[YRI][hapmap];0.88[AFR][1000 genomes]
rs7893886	0.80[AFR][1000 genomes]
rs7894200	0.86[YRI][hapmap]
rs7898071	1.00[AMR][1000 genomes]
rs7910909	0.91[YRI][hapmap];1.00[AMR][1000 genomes]
rs7912481	1.00[AMR][1000 genomes]
rs7922270	0.86[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98611000-98713000	Weak transcription	Aorta	Aorta
2	chr10:98624400-98663000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr10:98624800-98696000	Weak transcription	K562	blood
4	chr10:98633600-98670000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr10:98636800-98683400	Weak transcription	Osteobl	bone
6	chr10:98637400-98708800	Weak transcription	NH-A	brain
7	chr10:98639800-98714600	Weak transcription	Esophagus	oesophagus
8	chr10:98640600-98666800	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr10:98640600-98714600	Weak transcription	Hela-S3	cervix
10	chr10:98642800-98663800	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr10:98644800-98663800	Weak transcription	Ovary	ovary
12	chr10:98644800-98664000	Weak transcription	NHLF	lung
13	chr10:98644800-98669800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr10:98644800-98674600	Weak transcription	Spleen	Spleen
15	chr10:98644800-98681400	Weak transcription	Right Ventricle	heart
16	chr10:98645400-98662600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr10:98645400-98678000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr10:98649400-98672200	Weak transcription	HSMM	muscle
19	chr10:98650000-98661400	Weak transcription	Right Atrium	heart
20	chr10:98650200-98661400	Weak transcription	Fetal Kidney	kidney
21	chr10:98650200-98662000	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr10:98650200-98662600	Weak transcription	Gastric	stomach
23	chr10:98650200-98673400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr10:98650200-98674600	Weak transcription	Thymus	Thymus
25	chr10:98650200-98708800	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr10:98650600-98667400	Weak transcription	HMEC	breast
27	chr10:98651800-98667800	Weak transcription	Fetal Stomach	stomach
28	chr10:98652000-98673600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr10:98652200-98661000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr10:98652400-98672200	Weak transcription	Fetal Thymus	thymus
31	chr10:98652600-98660600	Weak transcription	Fetal Muscle Leg	muscle
32	chr10:98652600-98661400	Weak transcription	Fetal Lung	lung
33	chr10:98652600-98662600	Weak transcription	Brain Anterior Caudate	brain
34	chr10:98652600-98664000	Weak transcription	Fetal Brain Female	brain
35	chr10:98652600-98667600	Weak transcription	Dnd41	blood
36	chr10:98652600-98669000	Weak transcription	Primary B cells from cord blood	blood
37	chr10:98652600-98671200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr10:98652600-98673600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
39	chr10:98652600-98674800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr10:98652800-98662400	Weak transcription	Fetal Intestine Large	intestine
41	chr10:98652800-98662600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr10:98652800-98667600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr10:98652800-98667600	Weak transcription	Monocytes-CD14+_RO01746	blood
44	chr10:98653000-98666800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
45	chr10:98653000-98667600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr10:98653200-98661000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr10:98653200-98665600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr10:98653400-98661400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr10:98653400-98661400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr10:98653400-98675200	Weak transcription	Primary hematopoietic stem cells	blood

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