Variant report

Variant	rs7073147
Chromosome Location	chr10:98655604-98655605
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1129468	0.85[AMR][1000 genomes]
rs34104025	0.85[AMR][1000 genomes]
rs6584105	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7081177	0.83[AFR][1000 genomes]
rs7081893	0.85[AMR][1000 genomes]
rs7082112	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7084507	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7094471	0.85[AMR][1000 genomes]
rs7893886	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7894200	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7899775	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7900672	0.85[AMR][1000 genomes]
rs7906581	0.85[AMR][1000 genomes]
rs7922270	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98611000-98713000	Weak transcription	Aorta	Aorta
2	chr10:98624400-98663000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr10:98624800-98656800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr10:98624800-98696000	Weak transcription	K562	blood
5	chr10:98633000-98656600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr10:98633600-98670000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr10:98636800-98683400	Weak transcription	Osteobl	bone
8	chr10:98637400-98708800	Weak transcription	NH-A	brain
9	chr10:98639800-98714600	Weak transcription	Esophagus	oesophagus
10	chr10:98640600-98666800	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr10:98640600-98714600	Weak transcription	Hela-S3	cervix
12	chr10:98642800-98663800	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr10:98644600-98658600	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr10:98644600-98658800	Weak transcription	Rectal Smooth Muscle	rectum
15	chr10:98644800-98663800	Weak transcription	Ovary	ovary
16	chr10:98644800-98664000	Weak transcription	NHLF	lung
17	chr10:98644800-98669800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr10:98644800-98674600	Weak transcription	Spleen	Spleen
19	chr10:98644800-98681400	Weak transcription	Right Ventricle	heart
20	chr10:98645000-98656400	Weak transcription	NHDF-Ad	bronchial
21	chr10:98645200-98658000	Weak transcription	Brain Angular Gyrus	brain
22	chr10:98645400-98658000	Weak transcription	Brain Substantia Nigra	brain
23	chr10:98645400-98662600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr10:98645400-98678000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr10:98649400-98656200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr10:98649400-98656800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr10:98649400-98657200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr10:98649400-98672200	Weak transcription	HSMM	muscle
29	chr10:98650000-98656200	Weak transcription	Left Ventricle	heart
30	chr10:98650000-98656400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr10:98650000-98657800	Weak transcription	Fetal Heart	heart
32	chr10:98650000-98661400	Weak transcription	Right Atrium	heart
33	chr10:98650200-98657000	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr10:98650200-98661400	Weak transcription	Fetal Kidney	kidney
35	chr10:98650200-98662000	Weak transcription	Primary monocytes fromperipheralblood	blood
36	chr10:98650200-98662600	Weak transcription	Gastric	stomach
37	chr10:98650200-98673400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr10:98650200-98674600	Weak transcription	Thymus	Thymus
39	chr10:98650200-98708800	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr10:98650400-98657000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr10:98650600-98657000	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr10:98650600-98667400	Weak transcription	HMEC	breast
43	chr10:98651200-98657600	Enhancers	HepG2	liver
44	chr10:98651800-98667800	Weak transcription	Fetal Stomach	stomach
45	chr10:98652000-98673600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr10:98652200-98657000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
47	chr10:98652200-98661000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
48	chr10:98652400-98672200	Weak transcription	Fetal Thymus	thymus
49	chr10:98652600-98656200	Weak transcription	Primary T helper cells fromperipheralblood	blood
50	chr10:98652600-98656400	Weak transcription	GM12878-XiMat	blood

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