Variant report

Variant	rs7094471
Chromosome Location	chr10:98735772-98735773
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:98602713..98604246-chr10:98733891..98736540,2	MCF-7	breast:
2	chr10:98729621..98733205-chr10:98734589..98737656,3	K562	blood:
3	chr10:98726233..98732508-chr10:98732953..98737473,8	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1129468	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34104025	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3814163	0.84[ASW][hapmap];0.85[YRI][hapmap]
rs6584105	0.83[ASW][hapmap];1.00[GIH][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.83[YRI][hapmap];0.85[AMR][1000 genomes]
rs6584106	0.83[YRI][hapmap]
rs7073147	0.85[AMR][1000 genomes]
rs7081893	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7082112	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7084507	0.83[ASW][hapmap];1.00[GIH][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.83[YRI][hapmap];0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7085209	0.83[ASW][hapmap];1.00[GIH][hapmap];0.91[MKK][hapmap];0.88[YRI][hapmap]
rs7086735	1.00[GIH][hapmap]
rs7100376	0.88[YRI][hapmap]
rs7893886	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7894200	0.91[ASW][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.83[YRI][hapmap];0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7899775	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7900672	1.00[GIH][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7906581	0.92[ASW][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7922270	0.83[ASW][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.83[YRI][hapmap];0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1052931	chr10:98676192-98862301	Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1042398	chr10:98691406-98851346	Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv831951	chr10:98717103-98761280	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98709200-98736200	Weak transcription	Psoas Muscle	Psoas
2	chr10:98715400-98740600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr10:98715400-98740600	Weak transcription	Aorta	Aorta
4	chr10:98715400-98740600	Weak transcription	Esophagus	oesophagus
5	chr10:98715600-98740600	Weak transcription	Fetal Stomach	stomach
6	chr10:98715600-98740600	Weak transcription	NHEK	skin
7	chr10:98715800-98740600	Weak transcription	Lung	lung
8	chr10:98716000-98737600	Weak transcription	Thymus	Thymus
9	chr10:98716000-98740200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr10:98716000-98740400	Weak transcription	Fetal Muscle Trunk	muscle
11	chr10:98716000-98740600	Weak transcription	Brain Anterior Caudate	brain
12	chr10:98716000-98740600	Weak transcription	Gastric	stomach
13	chr10:98716000-98740600	Weak transcription	Left Ventricle	heart
14	chr10:98716000-98740600	Weak transcription	Stomach Smooth Muscle	stomach
15	chr10:98716000-98741000	Weak transcription	Brain Germinal Matrix	brain
16	chr10:98716200-98740800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr10:98716400-98740600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr10:98716600-98739800	Weak transcription	Primary T cells from cord blood	blood
19	chr10:98716600-98740600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr10:98716600-98740600	Weak transcription	Ovary	ovary
21	chr10:98716600-98740600	Weak transcription	HMEC	breast
22	chr10:98716600-98743200	Weak transcription	Hela-S3	cervix
23	chr10:98716800-98740600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr10:98717000-98740600	Weak transcription	Fetal Kidney	kidney
25	chr10:98717400-98740600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr10:98717800-98740600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr10:98718600-98740400	Weak transcription	Primary T cells fromperipheralblood	blood
28	chr10:98718600-98740600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr10:98719000-98740600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr10:98719000-98740600	Weak transcription	Dnd41	blood
31	chr10:98719800-98740600	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr10:98720000-98739200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr10:98720000-98740400	Weak transcription	Primary hematopoietic stem cells	blood
34	chr10:98720000-98740600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr10:98720000-98740600	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr10:98720400-98740600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr10:98720800-98741400	Weak transcription	NHLF	lung
38	chr10:98721000-98737400	Weak transcription	Fetal Thymus	thymus
39	chr10:98723000-98740600	Weak transcription	Fetal Lung	lung
40	chr10:98723400-98738000	Weak transcription	Monocytes-CD14+_RO01746	blood
41	chr10:98723400-98740400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr10:98723400-98740600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr10:98723400-98740600	Weak transcription	Primary monocytes fromperipheralblood	blood
44	chr10:98723400-98740600	Weak transcription	Brain Substantia Nigra	brain
45	chr10:98724000-98740600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr10:98728200-98740400	Weak transcription	Osteobl	bone
47	chr10:98728400-98740600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr10:98728400-98740600	Weak transcription	HSMM	muscle
49	chr10:98728600-98741000	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr10:98728800-98740600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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