Variant report

Variant	rs1129468
Chromosome Location	chr10:98722985-98722986
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs34104025	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6584105	0.85[AMR][1000 genomes]
rs7073147	0.85[AMR][1000 genomes]
rs7081893	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7082112	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7084507	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7094471	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7893886	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7894200	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7899775	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7900672	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7906581	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7922270	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1052931	chr10:98676192-98862301	Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1042398	chr10:98691406-98851346	Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv831951	chr10:98717103-98761280	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98679800-98724800	Weak transcription	Brain Cingulate Gyrus	brain
2	chr10:98709200-98736200	Weak transcription	Psoas Muscle	Psoas
3	chr10:98712800-98731200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:98715200-98723000	Weak transcription	Brain Substantia Nigra	brain
5	chr10:98715400-98726400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr10:98715400-98733800	Weak transcription	A549	lung
7	chr10:98715400-98740600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr10:98715400-98740600	Weak transcription	Aorta	Aorta
9	chr10:98715400-98740600	Weak transcription	Esophagus	oesophagus
10	chr10:98715600-98731000	Weak transcription	Small Intestine	intestine
11	chr10:98715600-98735600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr10:98715600-98740600	Weak transcription	Fetal Stomach	stomach
13	chr10:98715600-98740600	Weak transcription	NHEK	skin
14	chr10:98715800-98723000	Weak transcription	Rectal Smooth Muscle	rectum
15	chr10:98715800-98740600	Weak transcription	Lung	lung
16	chr10:98716000-98723000	Weak transcription	Brain Hippocampus Middle	brain
17	chr10:98716000-98723400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr10:98716000-98724800	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr10:98716000-98732200	Weak transcription	GM12878-XiMat	blood
20	chr10:98716000-98733600	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr10:98716000-98737600	Weak transcription	Thymus	Thymus
22	chr10:98716000-98740200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr10:98716000-98740400	Weak transcription	Fetal Muscle Trunk	muscle
24	chr10:98716000-98740600	Weak transcription	Brain Anterior Caudate	brain
25	chr10:98716000-98740600	Weak transcription	Gastric	stomach
26	chr10:98716000-98740600	Weak transcription	Left Ventricle	heart
27	chr10:98716000-98740600	Weak transcription	Stomach Smooth Muscle	stomach
28	chr10:98716000-98741000	Weak transcription	Brain Germinal Matrix	brain
29	chr10:98716200-98740800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr10:98716400-98725400	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr10:98716400-98726000	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr10:98716400-98740600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr10:98716600-98723000	Weak transcription	Adipose Nuclei	Adipose
34	chr10:98716600-98725000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr10:98716600-98725200	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr10:98716600-98739800	Weak transcription	Primary T cells from cord blood	blood
37	chr10:98716600-98740600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr10:98716600-98740600	Weak transcription	Ovary	ovary
39	chr10:98716600-98740600	Weak transcription	HMEC	breast
40	chr10:98716600-98743200	Weak transcription	Hela-S3	cervix
41	chr10:98716800-98727400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr10:98716800-98733400	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr10:98716800-98740600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr10:98717000-98740600	Weak transcription	Fetal Kidney	kidney
45	chr10:98717200-98728200	Weak transcription	Liver	Liver
46	chr10:98717400-98726200	Weak transcription	Fetal Intestine Small	intestine
47	chr10:98717400-98740600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr10:98717800-98740600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr10:98718200-98723600	Weak transcription	Primary T helper cells PMA-I stimulated	--
50	chr10:98718200-98733800	Weak transcription	Rectal Mucosa Donor 29	rectum

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