Variant report

Variant	rs35132401
Chromosome Location	chr17:37641251-37641252
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:37639508..37641924-chr17:37643017..37644889,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs34983824	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932024	chr17:37192290-37850932	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	92 gene(s)	inside rSNPs	diseases
2	nsv1060126	chr17:37333956-37659189	Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
3	nsv1057655	chr17:37333956-37732451	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
4	nsv1066033	chr17:37333956-37795617	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	78 gene(s)	inside rSNPs	diseases
5	nsv543340	chr17:37333956-37795617	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	78 gene(s)	inside rSNPs	diseases
6	nsv908204	chr17:37349655-37682657	Genic enhancers Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
7	nsv1061951	chr17:37442228-37770903	Bivalent Enhancer Strong transcription Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
8	nsv543341	chr17:37442228-37770903	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
9	esv1825702	chr17:37487168-37876767	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
10	nsv532712	chr17:37521822-37768345	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
11	nsv1063848	chr17:37575622-37707592	Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:37619800-37649200	Weak transcription	Esophagus	oesophagus
2	chr17:37620400-37650600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr17:37622200-37647000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr17:37623600-37642000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr17:37624000-37641600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr17:37624000-37680400	Weak transcription	Fetal Brain Male	brain
7	chr17:37624000-37690600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr17:37624800-37643000	Strong transcription	Fetal Stomach	stomach
9	chr17:37625200-37641800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr17:37625400-37641400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr17:37626600-37690600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr17:37626800-37641600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr17:37626800-37642800	Strong transcription	Fetal Intestine Large	intestine
14	chr17:37627000-37661600	Strong transcription	Fetal Intestine Small	intestine
15	chr17:37627800-37646800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr17:37628000-37642600	Weak transcription	Psoas Muscle	Psoas
17	chr17:37628000-37646800	Weak transcription	Colonic Mucosa	Colon
18	chr17:37628200-37642000	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr17:37628200-37646800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr17:37628400-37646800	Weak transcription	Rectal Smooth Muscle	rectum
21	chr17:37628400-37646800	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr17:37628400-37682200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr17:37628600-37649000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr17:37628800-37649200	Weak transcription	Aorta	Aorta
25	chr17:37629000-37649000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr17:37629200-37642200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr17:37629200-37649600	Weak transcription	Gastric	stomach
28	chr17:37629200-37655400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr17:37629400-37649000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr17:37630800-37646800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr17:37630800-37646800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr17:37630800-37657200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr17:37631000-37644200	Weak transcription	NH-A	brain
34	chr17:37631000-37646800	Weak transcription	Fetal Kidney	kidney
35	chr17:37631000-37647400	Weak transcription	Small Intestine	intestine
36	chr17:37631000-37650400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr17:37631400-37646800	Weak transcription	Right Ventricle	heart
38	chr17:37631600-37646600	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr17:37631600-37646800	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr17:37631600-37646800	Weak transcription	Ovary	ovary
41	chr17:37631600-37647000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr17:37631600-37647000	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr17:37631600-37647000	Weak transcription	Brain Substantia Nigra	brain
44	chr17:37631600-37649200	Weak transcription	Pancreas	Pancrea
45	chr17:37631800-37649000	Weak transcription	Brain Anterior Caudate	brain
46	chr17:37633000-37646600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr17:37633200-37641800	Weak transcription	NHLF	lung
48	chr17:37634200-37688600	Strong transcription	Monocytes-CD14+_RO01746	blood
49	chr17:37635000-37646400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr17:37635000-37647400	Weak transcription	Lung	lung

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