Variant report

Variant	rs35135622
Chromosome Location	chr7:27961286-27961287
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:27823795..27824666-chr7:27960936..27961533,3	MCF-7	breast:
2	chr7:27956076..27958841-chr7:27959567..27962104,2	MCF-7	breast:
3	chr7:27728994..27729819-chr7:27960541..27961502,2	MCF-7	breast:
4	chr7:27729063..27729834-chr7:27960691..27961448,3	MCF-7	breast:
5	chr7:27190114..27190689-chr7:27960542..27961528,3	MCF-7	breast:
6	chr7:27235522..27236272-chr7:27960656..27961542,3	MCF-7	breast:
7	chr7:27814098..27815065-chr7:27960672..27961296,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000106006	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10239787	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10244948	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs10248465	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs10250533	1.00[ASN][1000 genomes]
rs10275982	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10278615	1.00[ASN][1000 genomes]
rs10282662	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs10951188	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs12531234	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13236531	1.00[ASN][1000 genomes]
rs1557780	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs28507096	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4722745	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs67583972	1.00[ASN][1000 genomes]
rs7787576	0.83[ASN][1000 genomes]
rs7804500	1.00[ASN][1000 genomes]
rs7804617	1.00[ASN][1000 genomes]
rs7805497	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949025	chr7:27578167-28075172	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	esv2758109	chr7:27793616-27972869	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	esv2759520	chr7:27793616-27972869	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv1030685	chr7:27844038-28177301	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv1024819	chr7:27949955-28020969	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27941400-27990800	Weak transcription	Primary T cells from cord blood	blood
2	chr7:27941600-27962800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr7:27942400-28005600	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr7:27950400-27963000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr7:27951400-27963000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr7:27954600-27962600	Weak transcription	Right Ventricle	heart
7	chr7:27954600-27963000	Weak transcription	Left Ventricle	heart
8	chr7:27955200-27962600	Weak transcription	Fetal Muscle Trunk	muscle
9	chr7:27956600-27979800	Weak transcription	Aorta	Aorta
10	chr7:27957000-27962800	Weak transcription	Primary B cells from cord blood	blood
11	chr7:27957200-27979000	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr7:27957400-27962600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr7:27957400-27963200	Weak transcription	Stomach Smooth Muscle	stomach
14	chr7:27957600-27969200	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr7:27957600-28000800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr7:27957800-27973400	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr7:27958600-27962800	Weak transcription	Fetal Heart	heart
18	chr7:27959400-27961400	Enhancers	Colon Smooth Muscle	Colon
19	chr7:27959600-27961800	Enhancers	NHDF-Ad	bronchial
20	chr7:27959600-27962600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr7:27959800-27961400	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr7:27960200-27961400	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr7:27960200-27961400	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr7:27960200-27961400	Enhancers	Rectal Smooth Muscle	rectum
25	chr7:27960200-27964400	Enhancers	Dnd41	blood
26	chr7:27960400-27961400	Enhancers	iPS-18 Cell Line	embryonic stem cell
27	chr7:27960600-27961400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr7:27960600-27961400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
29	chr7:27960600-27961400	Enhancers	Cortex derived primary cultured neurospheres	brain
30	chr7:27960600-27961400	Enhancers	Brain Cingulate Gyrus	brain
31	chr7:27960600-27961400	Flanking Active TSS	A549	lung
32	chr7:27960600-27962400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr7:27960800-27961400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr7:27960800-27961400	Enhancers	Primary B cells from peripheral blood	blood
35	chr7:27960800-27961400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr7:27960800-27961400	Enhancers	Brain Hippocampus Middle	brain
37	chr7:27960800-27961400	Enhancers	Rectal Mucosa Donor 31	rectum
38	chr7:27960800-27961600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr7:27960800-27962400	Weak transcription	HSMMtube	muscle
40	chr7:27961000-27961600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr7:27961000-27962400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr7:27961000-27962400	Weak transcription	Placenta	Placenta
43	chr7:27961000-27962400	Weak transcription	Rectal Mucosa Donor 29	rectum
44	chr7:27961000-27962400	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr7:27961000-27962600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr7:27961000-27962600	Weak transcription	Adipose Nuclei	Adipose
47	chr7:27961000-27962600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr7:27961000-27962600	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr7:27961000-27962800	Weak transcription	H1 Cell Line	embryonic stem cell
50	chr7:27961000-27962800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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