Variant report

Variant	rs7787576
Chromosome Location	chr7:27966262-27966263
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10239787	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10244948	1.00[CHB][hapmap]
rs10248465	1.00[CHB][hapmap]
rs10250533	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs10275982	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs10278615	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs10282662	1.00[CHB][hapmap]
rs10951188	1.00[CHB][hapmap]
rs12531234	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs13236531	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs1557780	1.00[CHB][hapmap]
rs28507096	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs35135622	0.83[ASN][1000 genomes]
rs4722745	1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs67583972	0.83[ASN][1000 genomes]
rs7804500	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs7804617	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs7805497	1.00[CHB][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949025	chr7:27578167-28075172	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	esv2758109	chr7:27793616-27972869	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	esv2759520	chr7:27793616-27972869	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv1030685	chr7:27844038-28177301	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv1024819	chr7:27949955-28020969	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27941400-27990800	Weak transcription	Primary T cells from cord blood	blood
2	chr7:27942400-28005600	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr7:27956600-27979800	Weak transcription	Aorta	Aorta
4	chr7:27957200-27979000	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr7:27957600-27969200	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr7:27957600-28000800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr7:27957800-27973400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr7:27961000-27968000	Weak transcription	Brain Substantia Nigra	brain
9	chr7:27961000-27976000	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr7:27961000-27983400	Weak transcription	NH-A	brain
11	chr7:27961400-27967000	Weak transcription	Brain Cingulate Gyrus	brain
12	chr7:27963200-27968000	Weak transcription	Colon Smooth Muscle	Colon
13	chr7:27963400-27967400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr7:27963400-27978000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr7:27963600-27968000	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr7:27963600-27970600	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr7:27963600-27971800	Weak transcription	Fetal Stomach	stomach
18	chr7:27963600-27975600	Weak transcription	Fetal Heart	heart
19	chr7:27963600-27976400	Weak transcription	Psoas Muscle	Psoas
20	chr7:27963800-27975400	Weak transcription	Fetal Muscle Leg	muscle
21	chr7:27964000-27979200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr7:27964600-27972200	Weak transcription	NHDF-Ad	bronchial
23	chr7:27964600-27973200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr7:27964600-27975400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr7:27964800-27973200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr7:27965000-27967800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr7:27965600-27966400	Strong transcription	Primary B cells from cord blood	blood
28	chr7:27965600-27966600	Enhancers	Left Ventricle	heart
29	chr7:27966200-27967000	Genic enhancers	Primary B cells from peripheral blood	blood

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