Variant report

Variant	rs35142203
Chromosome Location	chr3:23943580-23943581
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:23942132..23944416-chr3:23956889..23958673,2	MCF-7	breast:
2	chr3:23930932..23933089-chr3:23942248..23944749,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000174748	Chromatin interaction
ENSG00000197885	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs55892419	1.00[AMR][1000 genomes]
rs56089678	1.00[AMR][1000 genomes]
rs56175014	1.00[AMR][1000 genomes]
rs56865260	1.00[AMR][1000 genomes]
rs59090179	1.00[AMR][1000 genomes]
rs60409112	1.00[AMR][1000 genomes]
rs72627047	1.00[AMR][1000 genomes]
rs73822650	1.00[AMR][1000 genomes]
rs73822686	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23916000-23950200	Weak transcription	Aorta	Aorta
2	chr3:23916200-23948800	Weak transcription	Colonic Mucosa	Colon
3	chr3:23922400-23956600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr3:23923000-23956600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr3:23923400-23955200	Weak transcription	Thymus	Thymus
6	chr3:23923400-23957000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr3:23923600-23956800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr3:23924200-23957800	Weak transcription	Esophagus	oesophagus
9	chr3:23924200-23957800	Weak transcription	Lung	lung
10	chr3:23928000-23957200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr3:23928800-23956000	Weak transcription	Small Intestine	intestine
12	chr3:23928800-23957400	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr3:23929000-23956600	Weak transcription	Rectal Smooth Muscle	rectum
14	chr3:23929800-23944200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr3:23930600-23945800	Weak transcription	Fetal Heart	heart
16	chr3:23930800-23954800	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr3:23930800-23956800	Weak transcription	Brain Hippocampus Middle	brain
18	chr3:23931200-23945800	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr3:23932000-23955400	Weak transcription	NHEK	skin
20	chr3:23934000-23944000	Weak transcription	HSMMtube	muscle
21	chr3:23934200-23956600	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr3:23934400-23956400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr3:23934600-23945800	Weak transcription	Hela-S3	cervix
24	chr3:23934600-23947600	Strong transcription	Fetal Stomach	stomach
25	chr3:23935000-23957400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr3:23935800-23954400	Weak transcription	NH-A	brain
27	chr3:23935800-23954600	Weak transcription	HUVEC	blood vessel
28	chr3:23936400-23951600	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr3:23936400-23951800	Weak transcription	Spleen	Spleen
30	chr3:23936400-23956400	Weak transcription	Psoas Muscle	Psoas
31	chr3:23936800-23957200	Weak transcription	Brain Substantia Nigra	brain
32	chr3:23937000-23956600	Weak transcription	Primary T cells fromperipheralblood	blood
33	chr3:23938000-23944200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr3:23938400-23946600	Strong transcription	Liver	Liver
35	chr3:23938400-23947000	Strong transcription	Fetal Muscle Trunk	muscle
36	chr3:23938600-23946200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr3:23938800-23946200	Strong transcription	Placenta	Placenta
38	chr3:23939000-23946000	Strong transcription	NHDF-Ad	bronchial
39	chr3:23939000-23946200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr3:23939400-23943800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr3:23939800-23956600	Weak transcription	Fetal Brain Male	brain
42	chr3:23940000-23944400	Strong transcription	HUES48 Cell Line	embryonic stem cell
43	chr3:23940400-23956600	Weak transcription	Pancreas	Pancrea
44	chr3:23940600-23948400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr3:23940600-23950800	Weak transcription	Brain Angular Gyrus	brain
46	chr3:23940600-23956600	Weak transcription	Brain Germinal Matrix	brain
47	chr3:23940600-23956800	Weak transcription	Primary neutrophils fromperipheralblood	blood
48	chr3:23940800-23944800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr3:23940800-23945800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr3:23940800-23945800	Weak transcription	Gastric	stomach

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