Variant report

Variant	rs73822650
Chromosome Location	chr3:24060916-24060917
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs35142203	1.00[AMR][1000 genomes]
rs55892419	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56089678	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56175014	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56865260	1.00[AMR][1000 genomes]
rs59090179	1.00[AMR][1000 genomes]
rs60409112	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72627047	1.00[AMR][1000 genomes]
rs73822648	0.82[AFR][1000 genomes]
rs73822686	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834638	chr3:23963860-24117191	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv834639	chr3:24037113-24233925	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv536523	chr3:24041166-24076110	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24053600-24065000	Weak transcription	Psoas Muscle	Psoas
2	chr3:24058600-24064800	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr3:24060200-24061200	Flanking Active TSS	NHEK	skin
4	chr3:24060200-24062000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr3:24060400-24061000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr3:24060400-24061600	Enhancers	Gastric	stomach
7	chr3:24060600-24061000	Enhancers	Fetal Thymus	thymus
8	chr3:24060600-24061600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr3:24060800-24061000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr3:24060800-24061000	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
11	chr3:24060800-24061000	Enhancers	HMEC	breast
12	chr3:24060800-24061400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr3:24060800-24061400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr3:24060800-24062000	Enhancers	Esophagus	oesophagus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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