Variant report

Variant	rs35160253
Chromosome Location	chr17:15845927-15845928
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr17:15845771-15845988	MCF10A-Er-Src	breast:	n/a	n/a
2	STAT3	chr17:15845760-15846038	MCF10A-Er-Src	breast:	n/a	chr17:15845989-15846001
3	MYC	chr17:15845352-15845935	MCF10A-Er-Src	breast:	n/a	n/a
4	STAT3	chr17:15845688-15846039	MCF10A-Er-Src	breast:	n/a	chr17:15845989-15846001
5	FOS	chr17:15845106-15846073	HUVEC	blood vessel:	n/a	chr17:15845280-15845292 chr17:15845282-15845290
6	FOS	chr17:15845788-15846035	MCF10A-Er-Src	breast:	n/a	n/a
7	SPI1	chr17:15845717-15846016	HL-60	blood:	n/a	n/a
8	SPI1	chr17:15845605-15846128	HL-60	blood:	n/a	n/a
9	STAT3	chr17:15845661-15846039	MCF10A-Er-Src	breast:	n/a	chr17:15845989-15846001
10	SPI1	chr17:15845802-15846044	GM12878	blood:	n/a	n/a
11	MYC	chr17:15845881-15845972	HUVEC	blood vessel:	n/a	n/a
12	SPI1	chr17:15845807-15845974	K562	blood:	n/a	n/a
13	MYC	chr17:15845685-15846097	NB4	blood:	n/a	n/a
14	FOS	chr17:15845691-15846013	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:15841943..15846200-chr17:15846723..15848699,3	MCF-7	breast:

Variant related genes	Relation type
ADORA2B	TF binding region
ENSG00000170425	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11655374	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11656489	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11656518	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11658454	0.82[AMR][1000 genomes]
rs12603728	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12603863	0.82[EUR][1000 genomes]
rs1558409	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1639393	0.85[EUR][1000 genomes]
rs1639394	0.87[EUR][1000 genomes]
rs1797453	0.85[EUR][1000 genomes]
rs1974626	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2429742	0.82[EUR][1000 genomes]
rs2535598	0.87[EUR][1000 genomes]
rs2535599	0.87[EUR][1000 genomes]
rs2779187	0.87[EUR][1000 genomes]
rs4791653	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62072030	0.80[AMR][1000 genomes]
rs62072032	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62072033	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62072034	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62072052	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7223657	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8076401	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9893636	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9894474	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9901375	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9903682	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9907878	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9912875	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916652	chr17:15093600-15856310	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv1059056	chr17:15294011-15856861	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv934185	chr17:15552960-16551197	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	190 gene(s)	inside rSNPs	diseases
4	nsv1062951	chr17:15561070-15890644	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
5	nsv1066023	chr17:15607267-16053512	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
6	esv3330182	chr17:15652014-16569534	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	177 gene(s)	inside rSNPs	diseases
7	esv3446844	chr17:15654843-16572246	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	177 gene(s)	inside rSNPs	diseases
8	nsv1061222	chr17:15672934-15999778	ZNF genes & repeats Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
9	nsv907706	chr17:15731923-16056442	ZNF genes & repeats Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
10	nsv1067555	chr17:15804228-16001117	Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
11	nsv1063459	chr17:15804228-16543593	Weak transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	164 gene(s)	inside rSNPs	diseases
12	nsv1061987	chr17:15810017-15855135	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:15844200-15847600	Weak transcription	Right Atrium	heart
2	chr17:15844800-15846200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr17:15844800-15846200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr17:15844800-15846400	Enhancers	NHEK	skin
5	chr17:15844800-15846800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr17:15845200-15846000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr17:15845200-15846200	Enhancers	HMEC	breast
8	chr17:15845200-15846200	Enhancers	NH-A	brain
9	chr17:15845200-15846400	Enhancers	HUVEC	blood vessel
10	chr17:15845200-15846600	Enhancers	Placenta	Placenta
11	chr17:15845400-15846200	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr17:15845400-15846400	Enhancers	Placenta Amnion	Placenta Amnion
13	chr17:15845400-15847200	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr17:15845600-15846200	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr17:15845600-15846400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr17:15845600-15846400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr17:15845600-15846400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr17:15845600-15846400	Enhancers	Hela-S3	cervix
19	chr17:15845800-15846000	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr17:15845800-15846000	Enhancers	Monocytes-CD14+_RO01746	blood
21	chr17:15845800-15846600	Enhancers	Primary B cells from cord blood	blood
22	chr17:15845800-15847000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr17:15845800-15847600	Enhancers	Primary monocytes fromperipheralblood	blood

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