Variant report
| Variant | rs35162874 |
|---|---|
| Chromosome Location | chr8:92339390-92339391 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:92333958..92336708-chr8:92339173..92340832,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs10101694 | 0.84[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs11991583 | 0.85[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs13275473 | 0.84[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs1562633 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs34982674 | 0.90[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs4629825 | 0.90[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs6983115 | 0.86[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs7007188 | 0.81[AMR][1000 genomes] |
| rs7814787 | 0.92[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs7817419 | 0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs7827280 | 0.85[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs7829485 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs7833573 | 0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs7836721 | 0.92[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs7846165 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs9657000 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs968398 | 0.89[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs996693 | 0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs996694 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1028628 | chr8:91680968-92418954 | Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 30 gene(s) | inside rSNPs | diseases |
| 2 | nsv539672 | chr8:91680968-92418954 | Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 30 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:92339200-92339600 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
