Variant report

Variant	rs7833573
Chromosome Location	chr8:92331402-92331403
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:92329814..92332160-chr8:92336142..92338599,2	MCF-7	breast:
2	chr8:92330006..92331978-chr8:92342240..92344194,2	K562	blood:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10101694	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10111571	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11991583	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13262139	0.94[ASN][1000 genomes]
rs13263714	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs13264260	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13266884	1.00[JPT][hapmap]
rs13275473	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13280977	0.94[ASN][1000 genomes]
rs1375248	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs1448674	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1562633	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34115889	0.94[ASN][1000 genomes]
rs34213542	0.81[ASN][1000 genomes]
rs34444723	0.94[ASN][1000 genomes]
rs34547129	0.81[ASN][1000 genomes]
rs34775583	0.94[ASN][1000 genomes]
rs34948223	0.94[ASN][1000 genomes]
rs34966681	0.94[ASN][1000 genomes]
rs34982674	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35159856	0.94[ASN][1000 genomes]
rs35162874	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35386021	0.94[ASN][1000 genomes]
rs35632298	0.94[ASN][1000 genomes]
rs35717576	0.81[ASN][1000 genomes]
rs35869355	0.81[ASN][1000 genomes]
rs4478534	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4629825	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4639475	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6981751	0.94[ASN][1000 genomes]
rs6983115	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6995995	0.94[ASN][1000 genomes]
rs7002943	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7007188	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7016454	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs71528791	0.81[ASN][1000 genomes]
rs71528792	0.94[ASN][1000 genomes]
rs7812726	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7814787	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7817419	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7823924	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7824716	0.94[ASN][1000 genomes]
rs7827280	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7829485	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7831823	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7834807	0.94[ASN][1000 genomes]
rs7836721	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7846165	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9657000	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs968398	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs996693	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs996694	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028628	chr8:91680968-92418954	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv539672	chr8:91680968-92418954	Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:92297600-92331800	Weak transcription	Pancreas	Pancrea
2	chr8:92317200-92331800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr8:92330200-92331800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr8:92330200-92333200	Enhancers	HMEC	breast
5	chr8:92330200-92333200	Enhancers	NHEK	skin
6	chr8:92330200-92333600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr8:92330400-92331800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr8:92330400-92331800	Enhancers	NHDF-Ad	bronchial
9	chr8:92330400-92332000	Enhancers	A549	lung
10	chr8:92330400-92332200	Enhancers	Rectal Smooth Muscle	rectum
11	chr8:92330400-92332200	Enhancers	Hela-S3	cervix
12	chr8:92330400-92332200	Enhancers	HSMM	muscle
13	chr8:92330400-92332400	Enhancers	Muscle Satellite Cultured Cells	--
14	chr8:92330400-92332600	Enhancers	NH-A	brain
15	chr8:92330400-92332800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr8:92330400-92332800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr8:92330400-92332800	Enhancers	HUVEC	blood vessel
18	chr8:92330400-92332800	Enhancers	Osteobl	bone
19	chr8:92330400-92333000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr8:92330400-92333000	Enhancers	NHLF	lung
21	chr8:92330400-92337200	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr8:92330600-92331800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr8:92330800-92331800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr8:92330800-92332200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr8:92330800-92332200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr8:92330800-92333000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr8:92331000-92332000	Enhancers	Stomach Mucosa	stomach
28	chr8:92331000-92332200	Enhancers	Stomach Smooth Muscle	stomach
29	chr8:92331000-92333000	Enhancers	Cortex derived primary cultured neurospheres	brain

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