Variant report

Variant	rs35163227
Chromosome Location	chr3:53127876-53127877
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:53120915..53122850-chr3:53127211..53128869,2	K562	blood:
2	chr3:53125946..53128333-chr3:53129675..53131960,2	K562	blood:
3	chr3:53126238..53129925-chr3:53133349..53135490,3	K562	blood:

Variant related genes	Relation type
ENSG00000272305	Chromatin interaction

Extended variants
information (count: 95 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs10510761	0.84[EUR][1000 genomes]
rs11706035	0.84[EUR][1000 genomes]
rs11707575	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11707780	0.94[EUR][1000 genomes]
rs11710292	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11710394	0.84[EUR][1000 genomes]
rs11710707	0.84[EUR][1000 genomes]
rs11711773	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11712653	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11713171	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11713206	0.84[EUR][1000 genomes]
rs11713290	0.84[EUR][1000 genomes]
rs11713859	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11713926	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11714037	0.84[EUR][1000 genomes]
rs11714876	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11714902	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11717132	0.84[EUR][1000 genomes]
rs11717619	0.84[EUR][1000 genomes]
rs11717715	0.84[EUR][1000 genomes]
rs11718388	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11718538	0.82[EUR][1000 genomes]
rs11718752	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11718834	0.84[EUR][1000 genomes]
rs11720191	0.84[EUR][1000 genomes]
rs13058817	0.87[EUR][1000 genomes]
rs13069006	0.84[EUR][1000 genomes]
rs13072395	0.84[EUR][1000 genomes]
rs13072457	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13072818	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13074524	0.84[EUR][1000 genomes]
rs13078834	0.84[EUR][1000 genomes]
rs13078971	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13084937	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13085514	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13085544	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13088281	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs13091844	0.84[EUR][1000 genomes]
rs13092352	0.82[EUR][1000 genomes]
rs13320044	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1346719	0.94[EUR][1000 genomes]
rs17052727	0.94[EUR][1000 genomes]
rs2336540	0.84[EUR][1000 genomes]
rs2336541	0.84[EUR][1000 genomes]
rs2564926	0.98[EUR][1000 genomes]
rs2581807	0.98[EUR][1000 genomes]
rs3097417	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34121720	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34238610	0.89[EUR][1000 genomes]
rs34244302	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34313969	0.84[EUR][1000 genomes]
rs34340609	0.94[EUR][1000 genomes]
rs34493168	0.84[EUR][1000 genomes]
rs34754279	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34872575	0.84[EUR][1000 genomes]
rs34933390	0.84[EUR][1000 genomes]
rs34943350	0.84[EUR][1000 genomes]
rs34979715	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35076015	0.89[EUR][1000 genomes]
rs35174175	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35378159	0.84[EUR][1000 genomes]
rs35384050	0.84[EUR][1000 genomes]
rs35385050	0.84[EUR][1000 genomes]
rs35507120	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35720014	0.84[EUR][1000 genomes]
rs35737577	0.84[EUR][1000 genomes]
rs35849389	0.84[EUR][1000 genomes]
rs36090694	0.84[EUR][1000 genomes]
rs3806692	0.94[EUR][1000 genomes]
rs3821872	0.91[EUR][1000 genomes]
rs4478072	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58515094	0.84[EUR][1000 genomes]
rs58660500	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59583591	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60887045	0.84[EUR][1000 genomes]
rs60942590	0.84[EUR][1000 genomes]
rs61172708	0.84[EUR][1000 genomes]
rs6445555	0.86[EUR][1000 genomes]
rs6445556	0.93[EUR][1000 genomes]
rs6445557	0.93[EUR][1000 genomes]
rs71301804	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs71301808	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs71301809	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs71301811	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71301814	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71301815	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs71301816	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs71617204	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs750474	0.93[EUR][1000 genomes]
rs7622420	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7625448	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7640293	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7645611	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9756317	0.98[EUR][1000 genomes]
rs9875573	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs35163227	TMEM110	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:53107600-53133600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr3:53107800-53134000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr3:53107800-53151400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr3:53117600-53130800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr3:53117800-53147200	Weak transcription	Psoas Muscle	Psoas
6	chr3:53118200-53129800	Weak transcription	Fetal Brain Male	brain
7	chr3:53118600-53135200	Weak transcription	NH-A	brain
8	chr3:53118800-53132000	Weak transcription	HSMM	muscle
9	chr3:53118800-53135200	Strong transcription	Fetal Thymus	thymus
10	chr3:53119000-53128000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr3:53119000-53135000	Weak transcription	K562	blood
12	chr3:53119000-53154200	Weak transcription	Stomach Mucosa	stomach
13	chr3:53119200-53133800	Strong transcription	Fetal Stomach	stomach
14	chr3:53119600-53136000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr3:53120400-53132000	Weak transcription	Hela-S3	cervix
16	chr3:53120400-53138600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr3:53120600-53134600	Strong transcription	Primary T helper cells fromperipheralblood	blood
18	chr3:53120800-53128400	Strong transcription	Gastric	stomach
19	chr3:53120800-53138400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
20	chr3:53120800-53144400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr3:53121200-53130200	Strong transcription	Primary B cells from peripheral blood	blood
22	chr3:53121200-53130200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr3:53121200-53134200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr3:53121400-53128200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr3:53121400-53128400	Strong transcription	Spleen	Spleen
26	chr3:53121400-53130600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr3:53121400-53142600	Strong transcription	Stomach Smooth Muscle	stomach
28	chr3:53121600-53129000	Strong transcription	Primary B cells from cord blood	blood
29	chr3:53121800-53135400	Strong transcription	Primary T cells from cord blood	blood
30	chr3:53121800-53137800	Strong transcription	Fetal Muscle Trunk	muscle
31	chr3:53122200-53130200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr3:53122200-53132800	Weak transcription	HUVEC	blood vessel
33	chr3:53122200-53133200	Weak transcription	A549	lung
34	chr3:53122400-53136800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr3:53122400-53143200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr3:53122800-53152200	Weak transcription	Small Intestine	intestine
37	chr3:53123000-53128200	Strong transcription	Aorta	Aorta
38	chr3:53123000-53129600	Strong transcription	Placenta	Placenta
39	chr3:53123000-53133000	Weak transcription	Fetal Kidney	kidney
40	chr3:53123200-53128400	Strong transcription	Thymus	Thymus
41	chr3:53123200-53128600	Strong transcription	Muscle Satellite Cultured Cells	--
42	chr3:53123200-53128600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr3:53123200-53128600	Strong transcription	Duodenum Mucosa	Duodenum
44	chr3:53123200-53128600	Strong transcription	Rectal Smooth Muscle	rectum
45	chr3:53123200-53129000	Strong transcription	Duodenum Smooth Muscle	Duodenum
46	chr3:53123200-53129000	Strong transcription	Skeletal Muscle Male	skeletal muscle
47	chr3:53123200-53130200	Strong transcription	Lung	lung
48	chr3:53123200-53130200	Strong transcription	Skeletal Muscle Female	skeletal muscle
49	chr3:53123200-53138800	Weak transcription	Pancreatic Islets	Pancreatic Islet
50	chr3:53123200-53148600	Strong transcription	Primary T cells fromperipheralblood	blood

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