Variant report

Variant	rs7645611
Chromosome Location	chr3:53125297-53125298
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:53118806..53121316-chr3:53124002..53125984,3	K562	blood:

Extended variants
information (count: 96 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:96)

rs_ID	r²[population]
rs10510761	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs11706035	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs11707575	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11707780	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes]
rs11710292	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11710394	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs11710707	0.84[EUR][1000 genomes]
rs11711773	0.88[EUR][1000 genomes]
rs11712653	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11713171	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11713206	0.84[EUR][1000 genomes]
rs11713290	0.84[EUR][1000 genomes]
rs11713859	0.87[EUR][1000 genomes]
rs11713926	0.88[CHB][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs11714037	0.84[EUR][1000 genomes]
rs11714876	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs11714902	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11717132	0.84[EUR][1000 genomes]
rs11717619	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs11717715	0.84[EUR][1000 genomes]
rs11718388	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11718538	0.82[EUR][1000 genomes]
rs11718752	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11718834	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs11720191	0.84[EUR][1000 genomes]
rs13058817	0.87[EUR][1000 genomes]
rs13069006	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs13072395	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs13072457	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13072818	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13074524	0.84[EUR][1000 genomes]
rs13078834	0.84[EUR][1000 genomes]
rs13078971	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13084937	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13085514	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13085544	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13088281	0.88[CHB][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs13091844	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs13092352	0.82[EUR][1000 genomes]
rs13320044	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1346719	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes]
rs1560333	1.00[JPT][hapmap]
rs17052727	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes]
rs2336540	0.84[EUR][1000 genomes]
rs2336541	0.84[EUR][1000 genomes]
rs2564926	0.98[EUR][1000 genomes]
rs2581807	0.98[EUR][1000 genomes]
rs3097417	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34121720	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34238610	0.89[EUR][1000 genomes]
rs34244302	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34313969	0.84[EUR][1000 genomes]
rs34340609	0.94[EUR][1000 genomes]
rs34493168	0.84[EUR][1000 genomes]
rs34754279	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34872575	0.84[EUR][1000 genomes]
rs34933390	0.84[EUR][1000 genomes]
rs34943350	0.84[EUR][1000 genomes]
rs34979715	0.89[EUR][1000 genomes]
rs35076015	0.89[EUR][1000 genomes]
rs35163227	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35174175	0.89[EUR][1000 genomes]
rs35378159	0.84[EUR][1000 genomes]
rs35384050	0.84[EUR][1000 genomes]
rs35385050	0.84[EUR][1000 genomes]
rs35507120	0.89[EUR][1000 genomes]
rs35720014	0.84[EUR][1000 genomes]
rs35737577	0.84[EUR][1000 genomes]
rs35849389	0.84[EUR][1000 genomes]
rs36090694	0.84[EUR][1000 genomes]
rs3806692	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes]
rs3821872	0.91[EUR][1000 genomes]
rs4478072	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58515094	0.84[EUR][1000 genomes]
rs58660500	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59583591	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60887045	0.84[EUR][1000 genomes]
rs60942590	0.84[EUR][1000 genomes]
rs61172708	0.84[EUR][1000 genomes]
rs6445555	0.86[EUR][1000 genomes]
rs6445556	0.93[EUR][1000 genomes]
rs6445557	0.93[EUR][1000 genomes]
rs71301804	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs71301808	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs71301809	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs71301811	0.98[EUR][1000 genomes]
rs71301814	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs71301815	0.82[ASN][1000 genomes]
rs71301816	0.90[ASN][1000 genomes]
rs71617204	0.89[EUR][1000 genomes]
rs750474	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes]
rs7622420	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7625448	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7640293	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9756317	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes]
rs9875573	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7645611	TMEM110	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:53107600-53133600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr3:53107800-53126000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr3:53107800-53134000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr3:53107800-53151400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr3:53117600-53130800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr3:53117800-53147200	Weak transcription	Psoas Muscle	Psoas
7	chr3:53118000-53125400	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr3:53118200-53129800	Weak transcription	Fetal Brain Male	brain
9	chr3:53118600-53135200	Weak transcription	NH-A	brain
10	chr3:53118800-53125800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr3:53118800-53132000	Weak transcription	HSMM	muscle
12	chr3:53118800-53135200	Strong transcription	Fetal Thymus	thymus
13	chr3:53119000-53128000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr3:53119000-53135000	Weak transcription	K562	blood
15	chr3:53119000-53154200	Weak transcription	Stomach Mucosa	stomach
16	chr3:53119200-53133800	Strong transcription	Fetal Stomach	stomach
17	chr3:53119600-53125800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr3:53119600-53136000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr3:53120400-53132000	Weak transcription	Hela-S3	cervix
20	chr3:53120400-53138600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr3:53120600-53134600	Strong transcription	Primary T helper cells fromperipheralblood	blood
22	chr3:53120800-53126600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr3:53120800-53128400	Strong transcription	Gastric	stomach
24	chr3:53120800-53138400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
25	chr3:53120800-53144400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr3:53121200-53130200	Strong transcription	Primary B cells from peripheral blood	blood
27	chr3:53121200-53130200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr3:53121200-53134200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr3:53121400-53128200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr3:53121400-53128400	Strong transcription	Spleen	Spleen
31	chr3:53121400-53130600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr3:53121400-53142600	Strong transcription	Stomach Smooth Muscle	stomach
33	chr3:53121600-53129000	Strong transcription	Primary B cells from cord blood	blood
34	chr3:53121800-53135400	Strong transcription	Primary T cells from cord blood	blood
35	chr3:53121800-53137800	Strong transcription	Fetal Muscle Trunk	muscle
36	chr3:53122200-53130200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr3:53122200-53132800	Weak transcription	HUVEC	blood vessel
38	chr3:53122200-53133200	Weak transcription	A549	lung
39	chr3:53122400-53136800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr3:53122400-53143200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr3:53122800-53152200	Weak transcription	Small Intestine	intestine
42	chr3:53123000-53128200	Strong transcription	Aorta	Aorta
43	chr3:53123000-53129600	Strong transcription	Placenta	Placenta
44	chr3:53123000-53133000	Weak transcription	Fetal Kidney	kidney
45	chr3:53123200-53126000	Strong transcription	Liver	Liver
46	chr3:53123200-53126400	Strong transcription	HepG2	liver
47	chr3:53123200-53126800	Strong transcription	Primary neutrophils fromperipheralblood	blood
48	chr3:53123200-53126800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
49	chr3:53123200-53127000	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr3:53123200-53127400	Enhancers	Fetal Heart	heart

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