Variant report

Variant	rs35163875
Chromosome Location	chr17:38858452-38858453
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12938105	0.90[AFR][1000 genomes]
rs12939122	1.00[AFR][1000 genomes]
rs12945365	0.90[AFR][1000 genomes]
rs12945784	1.00[AFR][1000 genomes]
rs12946793	0.90[AFR][1000 genomes]
rs35078263	0.90[AFR][1000 genomes]
rs35401703	0.90[AFR][1000 genomes]
rs35494992	0.90[AFR][1000 genomes]
rs35650621	0.90[AFR][1000 genomes]
rs35671506	1.00[AFR][1000 genomes]
rs35907708	0.90[AFR][1000 genomes]
rs36105662	0.90[AFR][1000 genomes]
rs60488918	0.90[AFR][1000 genomes]
rs71371441	1.00[AFR][1000 genomes]
rs71371442	0.90[AFR][1000 genomes]
rs71383382	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431626	chr17:38770965-38999722	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv908225	chr17:38776406-38868480	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38853000-38859800	Weak transcription	Pancreas	Pancrea
2	chr17:38853400-38864000	Weak transcription	A549	lung
3	chr17:38853800-38859800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr17:38853800-38859800	Weak transcription	NHEK	skin
5	chr17:38853800-38864000	Weak transcription	Right Atrium	heart
6	chr17:38854000-38858600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr17:38854000-38858600	Weak transcription	Hela-S3	cervix
8	chr17:38854000-38861800	Weak transcription	HMEC	breast
9	chr17:38854000-38875800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr17:38856600-38861600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr17:38856800-38863600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr17:38857400-38858800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr17:38858200-38858800	Enhancers	Placenta	Placenta
14	chr17:38858400-38859200	Weak transcription	Placenta Amnion	Placenta Amnion

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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