Variant report

No.	Distal block	Cell Line	Cell type
1	chr17:38837218..38838803-chr17:38851877..38853465,2	MCF-7	breast:
2	chr17:38798051..38800892-chr17:38851970..38854604,2	MCF-7	breast:
3	chr17:38471695..38474566-chr17:38851182..38854092,2	MCF-7	breast:
4	chr17:38801632..38805923-chr17:38849683..38856183,10	MCF-7	breast:

Variant related genes	Relation type
ENSG00000131759	Chromatin interaction
ENSG00000073584	Chromatin interaction

rSNPs within LD-proxies of this variant (count:16)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431626	chr17:38770965-38999722	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv908225	chr17:38776406-38868480	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38850000-38854000	Enhancers	Placenta	Placenta
2	chr17:38851000-38854000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr17:38852000-38854600	Enhancers	Fetal Kidney	kidney
4	chr17:38852200-38854000	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr17:38852200-38854000	Enhancers	Fetal Lung	lung
6	chr17:38852600-38853800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr17:38852600-38853800	Enhancers	NHEK	skin
8	chr17:38852600-38854000	Enhancers	Hela-S3	cervix
9	chr17:38852800-38853600	Bivalent Enhancer	HepG2	liver
10	chr17:38852800-38853800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr17:38852800-38854000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr17:38852800-38854000	Enhancers	HMEC	breast
13	chr17:38853000-38859800	Weak transcription	Pancreas	Pancrea
14	chr17:38853200-38853800	Weak transcription	Fetal Intestine Large	intestine
15	chr17:38853200-38854200	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr17:38853200-38856200	Weak transcription	Gastric	stomach
17	chr17:38853200-38858400	Enhancers	Placenta Amnion	Placenta Amnion
18	chr17:38853400-38853800	Enhancers	Liver	Liver
19	chr17:38853400-38855400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr17:38853400-38864000	Weak transcription	A549	lung

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