Variant report

Variant	rs35168178
Chromosome Location	chr7:121478188-121478189
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs13308121	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17531148	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2402591	0.86[EUR][1000 genomes]
rs34863408	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35002654	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35330552	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73229107	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7784550	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429808	chr7:121384049-121600049	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121472800-121479000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr7:121476400-121479000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr7:121476400-121479200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr7:121476600-121479000	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr7:121476600-121479200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr7:121477400-121478400	Enhancers	Fetal Brain Male	brain
7	chr7:121477600-121478800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr7:121477800-121478800	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr7:121477800-121479000	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr7:121477800-121479000	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr7:121477800-121479000	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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