Variant report
| Variant | rs73229107 |
|---|---|
| Chromosome Location | chr7:121482506-121482507 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-AASS-1 | chr7:121482422-121483274 | NONHSAT123014 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:8)
| rs_ID | r2[population] |
|---|---|
| rs13308121 | 0.85[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs17531148 | 0.82[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs2402591 | 0.86[EUR][1000 genomes] |
| rs34863408 | 0.82[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs35002654 | 0.85[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs35168178 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35330552 | 0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs7784550 | 0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv429808 | chr7:121384049-121600049 | Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
