Variant report

Variant	rs35171686
Chromosome Location	chr6:88410715-88410716
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:88359821..88361812-chr6:88410685..88412446,2	MCF-7	breast:
2	chr6:88408898..88411861-chr6:88430189..88432233,3	K562	blood:
3	chr6:88409661..88412134-chr6:88428970..88430720,2	MCF-7	breast:
4	chr6:88408810..88411084-chr6:88834084..88837028,2	K562	blood:
5	chr6:88298133..88299802-chr6:88410474..88412513,2	MCF-7	breast:
6	chr6:88299553..88301559-chr6:88410382..88412634,2	MCF-7	breast:
7	chr6:88180469..88184304-chr6:88409511..88413377,7	K562	blood:
8	chr6:88116486..88118287-chr6:88408071..88410936,2	MCF-7	breast:
9	chr6:88372101..88374579-chr6:88409088..88410722,2	K562	blood:
10	chr3:5024388..5025071-chr6:88410307..88411192,2	Hela-S3	cervix:
11	chr6:88307562..88310248-chr6:88408505..88411204,2	K562	blood:
12	chr6:88180469..88184304-chr6:88409409..88413377,5	K562	blood:
13	chr6:88298942..88303064-chr6:88409165..88412231,4	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RARS2-4	chr6:88410020-88410933	NONHSAT113914

No data

Variant related genes	Relation type
ENSG00000238628	Chromatin interaction
ENSG00000164414	Chromatin interaction
ENSG00000213204	Chromatin interaction
ENSG00000146282	Chromatin interaction
ENSG00000135336	Chromatin interaction
ENSG00000272514	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs34582358	0.81[EUR][1000 genomes]
rs71572771	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758068	chr6:88358988-88441473	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	esv2759454	chr6:88358988-88441473	Strong transcription Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv7941	chr6:88403555-88413595	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:88407000-88412800	Active TSS	Thymus	Thymus
2	chr6:88407200-88410800	Active TSS	Right Atrium	heart
3	chr6:88407200-88411000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr6:88407400-88411000	Flanking Active TSS	Primary B cells from cord blood	blood
5	chr6:88407400-88411200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr6:88407400-88412600	Active TSS	Colonic Mucosa	Colon
7	chr6:88407400-88412600	Active TSS	Ovary	ovary
8	chr6:88407400-88412800	Active TSS	Aorta	Aorta
9	chr6:88407400-88413200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr6:88407400-88413200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr6:88407400-88413200	Active TSS	Psoas Muscle	Psoas
12	chr6:88407600-88412800	Active TSS	H1 Cell Line	embryonic stem cell
13	chr6:88407600-88413000	Active TSS	H9 Cell Line	embryonic stem cell
14	chr6:88407600-88413000	Active TSS	iPS-15b Cell Line	embryonic stem cell
15	chr6:88407600-88413000	Active TSS	HSMMtube	muscle
16	chr6:88407800-88412800	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
17	chr6:88408000-88411000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr6:88408000-88412200	Active TSS	Skeletal Muscle Female	skeletal muscle
19	chr6:88408000-88412600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr6:88408000-88412600	Active TSS	A549	lung
21	chr6:88408000-88412800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr6:88408000-88412800	Active TSS	Breast Myoepithelial Primary Cells	Breast
23	chr6:88408000-88412800	Active TSS	Fetal Intestine Large	intestine
24	chr6:88408000-88412800	Active TSS	Fetal Intestine Small	intestine
25	chr6:88408000-88412800	Active TSS	Fetal Muscle Leg	muscle
26	chr6:88408000-88413000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr6:88408000-88413000	Active TSS	HUES64 Cell Line	embryonic stem cell
28	chr6:88408000-88413000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
29	chr6:88408000-88413000	Active TSS	Duodenum Smooth Muscle	Duodenum
30	chr6:88408000-88413000	Active TSS	Stomach Smooth Muscle	stomach
31	chr6:88408000-88413000	Active TSS	HMEC	breast
32	chr6:88408000-88413000	Active TSS	HSMM	muscle
33	chr6:88408000-88413000	Active TSS	NHDF-Ad	bronchial
34	chr6:88408000-88413200	Active TSS	HUES48 Cell Line	embryonic stem cell
35	chr6:88408200-88412200	Active TSS	Hela-S3	cervix
36	chr6:88408200-88412200	Active TSS	Osteobl	bone
37	chr6:88408200-88412400	Active TSS	Primary monocytes fromperipheralblood	blood
38	chr6:88408200-88412600	Active TSS	Primary T cells fromperipheralblood	blood
39	chr6:88408200-88412800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
40	chr6:88408200-88412800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr6:88408200-88412800	Active TSS	Placenta	Placenta
42	chr6:88408200-88413000	Active TSS	iPS-20b Cell Line	embryonic stem cell
43	chr6:88408200-88413000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr6:88408200-88413000	Active TSS	NHLF	lung
45	chr6:88408200-88413200	Active TSS	HUES6 Cell Line	embryonic stem cell
46	chr6:88408200-88413200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr6:88408400-88411000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
48	chr6:88408400-88412400	Active TSS	Duodenum Mucosa	Duodenum
49	chr6:88408400-88412400	Active TSS	Fetal Lung	lung
50	chr6:88408400-88412400	Active TSS	Skeletal Muscle Male	skeletal muscle

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