Variant report

Variant	rs71572771
Chromosome Location	chr6:88341044-88341045
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:88323620..88325192-chr6:88338227..88341168,2	K562	blood:
2	chr6:88339089..88341895-chr6:88342022..88343727,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs13207635	1.00[AFR][1000 genomes]
rs34653904	1.00[AFR][1000 genomes]
rs35171686	0.83[AMR][1000 genomes]
rs62000376	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031961	chr6:88110401-88367006	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv1031460	chr6:88153079-88410050	Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv1026482	chr6:88164934-88409728	Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv1027706	chr6:88168987-88409728	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:88300600-88391200	Weak transcription	Colonic Mucosa	Colon
2	chr6:88301000-88347200	Weak transcription	Small Intestine	intestine
3	chr6:88301200-88385000	Weak transcription	Colon Smooth Muscle	Colon
4	chr6:88301400-88354400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr6:88301400-88354600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr6:88302000-88347400	Weak transcription	Brain Cingulate Gyrus	brain
7	chr6:88302000-88354400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr6:88302000-88354600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr6:88305000-88398800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr6:88308800-88369800	Weak transcription	Fetal Brain Male	brain
11	chr6:88312200-88371200	Weak transcription	NHEK	skin
12	chr6:88312400-88380600	Weak transcription	Brain Substantia Nigra	brain
13	chr6:88314000-88384800	Weak transcription	Hela-S3	cervix
14	chr6:88314200-88399200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr6:88314600-88385000	Weak transcription	Esophagus	oesophagus
16	chr6:88316600-88381200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:88316600-88390000	Weak transcription	Pancreas	Pancrea
18	chr6:88320400-88400800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr6:88321200-88348400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr6:88321600-88350000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr6:88322000-88346200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr6:88322000-88352800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr6:88322600-88344800	Weak transcription	HMEC	breast
24	chr6:88322800-88344000	Weak transcription	Liver	Liver
25	chr6:88322800-88344800	Weak transcription	NH-A	brain
26	chr6:88322800-88382000	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr6:88323000-88342000	Weak transcription	K562	blood
28	chr6:88323000-88344600	Weak transcription	Brain Hippocampus Middle	brain
29	chr6:88323000-88344800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr6:88323000-88346200	Weak transcription	Fetal Kidney	kidney
31	chr6:88323000-88366400	Weak transcription	A549	lung
32	chr6:88324000-88344000	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr6:88324000-88347400	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr6:88324000-88369800	Weak transcription	Rectal Smooth Muscle	rectum
35	chr6:88324000-88385000	Weak transcription	Gastric	stomach
36	chr6:88324200-88344800	Weak transcription	Primary monocytes fromperipheralblood	blood
37	chr6:88324200-88346000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr6:88324200-88346200	Weak transcription	Fetal Brain Female	brain
39	chr6:88324200-88350600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr6:88324200-88366600	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr6:88324200-88369000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr6:88324200-88370200	Weak transcription	Psoas Muscle	Psoas
43	chr6:88324200-88378200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr6:88324200-88380400	Weak transcription	Primary neutrophils fromperipheralblood	blood
45	chr6:88324400-88344600	Weak transcription	Monocytes-CD14+_RO01746	blood
46	chr6:88324800-88341400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr6:88324800-88344000	Weak transcription	Duodenum Mucosa	Duodenum
48	chr6:88325200-88344800	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr6:88325200-88344800	Weak transcription	Stomach Smooth Muscle	stomach
50	chr6:88325400-88344800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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