Variant report

Variant	rs62000376
Chromosome Location	chr6:88391405-88391406
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:88386476..88391429-chr6:88407886..88413024,9	MCF-7	breast:
2	chr6:88391233..88396986-chr6:88407673..88412388,9	K562	blood:
3	chr6:86387332..86389919-chr6:88391343..88393684,2	K562	blood:
4	chr6:88388778..88396986-chr6:88407117..88413072,10	K562	blood:
5	chr6:88389328..88391908-chr6:88403558..88405512,2	K562	blood:
6	chr6:88389146..88392060-chr6:88395023..88397672,4	K562	blood:
7	chr6:88389328..88391908-chr6:88402227..88405512,3	K562	blood:
8	chr6:88389765..88392894-chr6:88395067..88397964,5	K562	blood:

No data

Variant related genes	Relation type
ENSG00000135334	Chromatin interaction
ENSG00000203875	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs34653904	1.00[AFR][1000 genomes]
rs71572771	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031460	chr6:88153079-88410050	Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv1026482	chr6:88164934-88409728	Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv1027706	chr6:88168987-88409728	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	esv2758068	chr6:88358988-88441473	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	esv2759454	chr6:88358988-88441473	Strong transcription Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:88305000-88398800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:88314200-88399200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr6:88320400-88400800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr6:88339200-88396800	Weak transcription	Right Ventricle	heart
5	chr6:88349400-88397400	Weak transcription	Ovary	ovary
6	chr6:88358200-88392000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:88363000-88408200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr6:88363200-88395000	Weak transcription	Stomach Mucosa	stomach
9	chr6:88368000-88393400	Weak transcription	Small Intestine	intestine
10	chr6:88370200-88391800	Weak transcription	Fetal Brain Male	brain
11	chr6:88372600-88392000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr6:88380800-88392400	Strong transcription	Fetal Thymus	thymus
13	chr6:88381000-88391600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr6:88381200-88391600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr6:88381200-88391800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr6:88381400-88400600	Weak transcription	Right Atrium	heart
17	chr6:88381600-88392000	Weak transcription	Aorta	Aorta
18	chr6:88381800-88392000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr6:88382200-88391600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr6:88382400-88391800	Weak transcription	Rectal Smooth Muscle	rectum
21	chr6:88383200-88392200	Strong transcription	Primary monocytes fromperipheralblood	blood
22	chr6:88383600-88391600	Strong transcription	HUES6 Cell Line	embryonic stem cell
23	chr6:88384600-88392200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
24	chr6:88385400-88391600	Strong transcription	Primary neutrophils fromperipheralblood	blood
25	chr6:88385400-88391800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr6:88385400-88393400	Weak transcription	Spleen	Spleen
27	chr6:88385400-88394800	Weak transcription	Brain Substantia Nigra	brain
28	chr6:88385400-88399800	Weak transcription	Brain Hippocampus Middle	brain
29	chr6:88385400-88401200	Weak transcription	Fetal Heart	heart
30	chr6:88385600-88391800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr6:88385600-88391800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr6:88385800-88391600	Weak transcription	NHLF	lung
33	chr6:88385800-88398600	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr6:88385800-88399200	Weak transcription	Brain Anterior Caudate	brain
35	chr6:88386000-88392000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr6:88386000-88396400	Weak transcription	Lung	lung
37	chr6:88386200-88399000	Weak transcription	Gastric	stomach
38	chr6:88387000-88391600	Strong transcription	Primary T helper cells PMA-I stimulated	--
39	chr6:88387000-88391800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr6:88387400-88398600	Weak transcription	Stomach Smooth Muscle	stomach
41	chr6:88387600-88394800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr6:88387600-88397000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr6:88387600-88407000	Weak transcription	Fetal Kidney	kidney
44	chr6:88387800-88391600	Weak transcription	HSMMtube	muscle
45	chr6:88387800-88391800	Weak transcription	HMEC	breast
46	chr6:88387800-88393400	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr6:88387800-88400600	Weak transcription	K562	blood
48	chr6:88388000-88392200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
49	chr6:88388000-88393400	Weak transcription	Left Ventricle	heart
50	chr6:88388000-88394200	Weak transcription	Duodenum Smooth Muscle	Duodenum

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