Variant report

Variant	rs351739
Chromosome Location	chr6:109503976-109503977
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:109503045..109504923-chr6:109532588..109535516,2	MCF-7	breast:
2	chr6:109503627..109504613-chr6:109766403..109766938,2	MCF-7	breast:
3	chr6:109502825..109510460-chr6:109701859..109705678,15	MCF-7	breast:

Variant related genes	Relation type
ENSG00000135535	Chromatin interaction
ENSG00000260273	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs12176068	0.82[ASN][1000 genomes]
rs1260593	0.81[CHB][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs1269172	0.82[ASN][1000 genomes]
rs1271697	0.82[ASN][1000 genomes]
rs1741921	0.82[ASN][1000 genomes]
rs1766813	0.80[ASN][1000 genomes]
rs1766814	0.82[ASN][1000 genomes]
rs2483913	0.82[ASN][1000 genomes]
rs351724	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs351725	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs351742	0.81[CHB][hapmap];0.92[CHD][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs351743	0.82[ASN][1000 genomes]
rs371960	0.81[CHB][hapmap];0.92[CHD][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs378447	0.82[ASN][1000 genomes]
rs381565	0.82[ASN][1000 genomes]
rs386696	0.81[CHB][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs392820	0.81[ASN][1000 genomes]
rs398944	0.82[ASN][1000 genomes]
rs399561	0.81[CHB][hapmap];0.92[CHD][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs419998	0.82[ASN][1000 genomes]
rs427960	0.81[CHB][hapmap];0.92[CHD][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs435090	0.80[ASN][1000 genomes]
rs435611	0.82[ASN][1000 genomes]
rs437779	0.82[ASN][1000 genomes]
rs440849	0.82[ASN][1000 genomes]
rs442405	0.81[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs445796	0.82[ASN][1000 genomes]
rs449850	0.81[CHB][hapmap];0.92[CHD][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs455839	0.81[CHB][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs458185	0.81[CHB][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs458740	0.83[CHB][hapmap];0.84[JPT][hapmap];0.82[ASN][1000 genomes]
rs459956	0.81[CHB][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs461487	0.80[CHB][hapmap];0.84[JPT][hapmap];0.82[ASN][1000 genomes]
rs463503	0.84[CHB][hapmap];0.84[JPT][hapmap];0.82[ASN][1000 genomes]
rs463916	0.81[CHB][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs9398188	0.82[ASN][1000 genomes]
rs9480910	0.82[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs351739	GSTM2P1	cis	parietal	SCAN

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109500400-109504000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:109502000-109506200	Enhancers	Fetal Muscle Leg	muscle
3	chr6:109503000-109504600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr6:109503200-109504200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:109503400-109504000	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr6:109503400-109504600	Enhancers	Adipose Nuclei	Adipose
7	chr6:109503400-109504600	Flanking Active TSS	HSMMtube	muscle
8	chr6:109503400-109505000	Enhancers	HSMM	muscle
9	chr6:109503600-109504000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr6:109503600-109504000	Bivalent Enhancer	Osteobl	bone
11	chr6:109503600-109504200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr6:109503600-109504400	Enhancers	Fetal Lung	lung
13	chr6:109503600-109504800	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
14	chr6:109503800-109504000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr6:109503800-109504000	Enhancers	Aorta	Aorta
16	chr6:109503800-109504000	Bivalent Enhancer	Brain Angular Gyrus	brain
17	chr6:109503800-109504000	Flanking Active TSS	Brain Hippocampus Middle	brain
18	chr6:109503800-109504000	Bivalent Enhancer	Fetal Heart	heart
19	chr6:109503800-109504200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr6:109503800-109504200	Bivalent Enhancer	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr6:109503800-109504200	Enhancers	Liver	Liver
22	chr6:109503800-109504200	Flanking Active TSS	Brain Substantia Nigra	brain
23	chr6:109503800-109504200	Enhancers	Sigmoid Colon	Sigmoid Colon
24	chr6:109503800-109504400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr6:109503800-109504600	Enhancers	Rectal Mucosa Donor 31	rectum
26	chr6:109503800-109505000	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr6:109503800-109505200	Enhancers	Stomach Mucosa	stomach
28	chr6:109503800-109505400	Enhancers	ES-I3 Cell Line	embryonic stem cell
29	chr6:109503800-109505800	Enhancers	HUES48 Cell Line	embryonic stem cell

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