Variant report

Variant	rs449850
Chromosome Location	chr6:109525045-109525046
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:109523746..109528105-chr6:109701830..109704928,6	MCF-7	breast:
2	chr6:109524072..109526745-chr6:109527369..109531249,4	K562	blood:
3	chr6:109519748..109522085-chr6:109522376..109525266,3	K562	blood:

Variant related genes	Relation type
ENSG00000260273	Chromatin interaction
ENSG00000135535	Chromatin interaction

Extended variants
information (count: 91 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs10447414	0.82[EUR][1000 genomes]
rs11153161	0.91[EUR][1000 genomes]
rs1146246	0.83[EUR][1000 genomes]
rs11964178	0.82[TSI][hapmap]
rs12176068	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1260593	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1260594	0.83[EUR][1000 genomes]
rs1260595	0.84[CEU][hapmap];0.83[EUR][1000 genomes]
rs1260596	0.83[CEU][hapmap];0.83[EUR][1000 genomes]
rs1269172	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1271697	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13196590	0.83[CEU][hapmap]
rs13202939	0.83[CEU][hapmap]
rs1341272	0.84[CEU][hapmap];0.82[GIH][hapmap];0.81[EUR][1000 genomes]
rs171272	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1741921	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1741930	0.84[CEU][hapmap];0.83[EUR][1000 genomes]
rs1761608	0.84[CEU][hapmap];0.82[GIH][hapmap];0.83[EUR][1000 genomes]
rs1766813	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1766814	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2483913	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2884036	0.83[CEU][hapmap]
rs34527629	0.81[EUR][1000 genomes]
rs351716	0.87[CEU][hapmap]
rs351717	0.87[CEU][hapmap];0.82[TSI][hapmap]
rs351719	0.83[CEU][hapmap]
rs351720	0.87[CEU][hapmap]
rs351721	0.83[CEU][hapmap]
rs351723	0.83[CEU][hapmap]
rs351724	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs351725	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs351726	0.83[CEU][hapmap]
rs351727	0.87[CEU][hapmap]
rs351728	0.92[CEU][hapmap];0.90[GIH][hapmap];0.92[TSI][hapmap];0.86[EUR][1000 genomes]
rs351730	0.83[CEU][hapmap]
rs351739	0.81[CHB][hapmap];0.92[CHD][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs351742	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs351743	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs351745	0.85[EUR][1000 genomes]
rs351748	0.85[EUR][1000 genomes]
rs351749	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs351752	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs351754	0.85[EUR][1000 genomes]
rs351755	0.85[EUR][1000 genomes]
rs351756	0.85[EUR][1000 genomes]
rs352837	0.83[EUR][1000 genomes]
rs368467	0.84[CEU][hapmap];0.83[EUR][1000 genomes]
rs371960	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs377436	0.83[CEU][hapmap]
rs378447	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs380774	0.83[EUR][1000 genomes]
rs381565	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs386696	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs388526	0.91[EUR][1000 genomes]
rs392820	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs396000	0.84[CEU][hapmap];0.82[GIH][hapmap];0.83[EUR][1000 genomes]
rs398944	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs399561	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs408944	0.84[EUR][1000 genomes]
rs410449	0.91[EUR][1000 genomes]
rs412754	0.83[CEU][hapmap]
rs418093	0.91[EUR][1000 genomes]
rs419106	0.84[CEU][hapmap];0.82[GIH][hapmap];0.85[EUR][1000 genomes]
rs419998	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs421790	0.91[EUR][1000 genomes]
rs427960	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4301336	0.83[CEU][hapmap]
rs435090	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs435611	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs436880	0.86[EUR][1000 genomes]
rs437779	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs440849	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs442405	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs445796	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs446974	0.83[CEU][hapmap]
rs449736	0.83[CEU][hapmap]
rs455839	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs458185	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs458740	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs459956	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs461487	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs463503	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs463916	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6919423	0.92[CEU][hapmap];0.90[GIH][hapmap];0.89[TSI][hapmap];0.83[EUR][1000 genomes]
rs830553	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs830554	0.83[CEU][hapmap]
rs9386775	0.82[TSI][hapmap]
rs9398188	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9400276	0.83[CEU][hapmap]
rs9480910	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487003	0.81[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs449850	GSTM2P1	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109516400-109535000	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr6:109517200-109544800	Weak transcription	Psoas Muscle	Psoas
3	chr6:109520400-109525200	Weak transcription	Stomach Mucosa	stomach

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