Variant report

Variant	rs408944
Chromosome Location	chr6:109515213-109515214
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:109515007..109517664-chr6:109549539..109552383,3	MCF-7	breast:

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs11153161	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11964178	0.92[ASN][1000 genomes]
rs12176068	0.85[EUR][1000 genomes]
rs1260593	0.85[EUR][1000 genomes]
rs1269172	0.84[EUR][1000 genomes]
rs1271693	0.89[ASN][1000 genomes]
rs1271697	0.84[EUR][1000 genomes]
rs13196590	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13211313	0.93[ASN][1000 genomes]
rs13211944	0.95[ASN][1000 genomes]
rs171272	0.84[EUR][1000 genomes]
rs1741921	0.82[EUR][1000 genomes]
rs1741923	0.97[ASN][1000 genomes]
rs1766814	0.83[EUR][1000 genomes]
rs2483913	0.85[EUR][1000 genomes]
rs34774766	0.97[ASN][1000 genomes]
rs351716	0.96[ASN][1000 genomes]
rs351717	0.96[ASN][1000 genomes]
rs351718	0.96[ASN][1000 genomes]
rs351719	0.96[ASN][1000 genomes]
rs351720	0.96[ASN][1000 genomes]
rs351721	0.96[ASN][1000 genomes]
rs351722	0.96[ASN][1000 genomes]
rs351723	0.96[ASN][1000 genomes]
rs351726	0.96[ASN][1000 genomes]
rs351727	0.95[ASN][1000 genomes]
rs351728	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs351730	0.96[ASN][1000 genomes]
rs351731	0.95[ASN][1000 genomes]
rs351732	0.94[ASN][1000 genomes]
rs351735	0.88[ASN][1000 genomes]
rs351736	0.88[ASN][1000 genomes]
rs351737	0.89[ASN][1000 genomes]
rs351742	0.84[EUR][1000 genomes]
rs351743	0.82[EUR][1000 genomes]
rs351744	0.94[ASN][1000 genomes]
rs351746	0.97[ASN][1000 genomes]
rs351747	0.97[ASN][1000 genomes]
rs351749	0.84[EUR][1000 genomes]
rs351750	0.97[ASN][1000 genomes]
rs351751	0.96[ASN][1000 genomes]
rs351752	0.84[EUR][1000 genomes]
rs353052	0.88[ASN][1000 genomes]
rs371960	0.84[EUR][1000 genomes]
rs377436	0.97[ASN][1000 genomes]
rs378447	0.84[EUR][1000 genomes]
rs381565	0.84[EUR][1000 genomes]
rs386696	0.85[EUR][1000 genomes]
rs388526	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs392820	0.82[EUR][1000 genomes]
rs396635	0.97[ASN][1000 genomes]
rs398944	0.83[EUR][1000 genomes]
rs399561	0.84[EUR][1000 genomes]
rs410449	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs412754	0.97[ASN][1000 genomes]
rs418093	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs419998	0.82[EUR][1000 genomes]
rs421790	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs422113	0.97[ASN][1000 genomes]
rs427960	0.84[EUR][1000 genomes]
rs429534	0.97[ASN][1000 genomes]
rs435090	0.81[EUR][1000 genomes]
rs435611	0.84[EUR][1000 genomes]
rs436880	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs437779	0.82[EUR][1000 genomes]
rs440849	0.82[EUR][1000 genomes]
rs442405	0.84[EUR][1000 genomes]
rs445796	0.85[EUR][1000 genomes]
rs446974	0.97[ASN][1000 genomes]
rs448496	0.96[ASN][1000 genomes]
rs449736	0.97[ASN][1000 genomes]
rs449850	0.84[EUR][1000 genomes]
rs455839	0.84[EUR][1000 genomes]
rs458185	0.84[EUR][1000 genomes]
rs458740	0.84[EUR][1000 genomes]
rs459956	0.84[EUR][1000 genomes]
rs461487	0.83[EUR][1000 genomes]
rs463503	0.84[EUR][1000 genomes]
rs463916	0.85[EUR][1000 genomes]
rs566164	0.89[ASN][1000 genomes]
rs59673	0.96[ASN][1000 genomes]
rs6919423	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6925339	0.96[ASN][1000 genomes]
rs830552	0.96[ASN][1000 genomes]
rs830553	0.83[EUR][1000 genomes]
rs830554	0.93[ASN][1000 genomes]
rs830556	0.96[ASN][1000 genomes]
rs9320278	0.96[ASN][1000 genomes]
rs9384701	0.96[ASN][1000 genomes]
rs9386774	0.93[ASN][1000 genomes]
rs9386775	0.93[ASN][1000 genomes]
rs9398188	0.84[EUR][1000 genomes]
rs9480910	0.85[EUR][1000 genomes]

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109510400-109516000	Weak transcription	Skeletal Muscle Female	skeletal muscle

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