Variant report

Variant	rs9384701
Chromosome Location	chr6:109557542-109557543
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:19)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:19 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TEAD4	chr6:109557430-109559356	K562	blood:	n/a	n/a
2	MAX	chr6:109557460-109557984	H1-hESC	embryonic stem cell:	n/a	n/a
3	CTCF	chr6:109557479-109557929	MCF-7	breast:	n/a	n/a
4	CTCF	chr6:109557531-109558041	MCF-7	breast:	n/a	n/a
5	MAX	chr6:109557500-109558084	K562	blood:	n/a	n/a
6	E2F6	chr6:109557472-109557949	H1-hESC	embryonic stem cell:	n/a	n/a
7	NR2F2	chr6:109557490-109559262	K562	blood:	n/a	n/a
8	RAD21	chr6:109557505-109558031	H1-hESC	embryonic stem cell:	n/a	n/a
9	E2F6	chr6:109557287-109557994	H1-hESC	embryonic stem cell:	n/a	n/a
10	RAD21	chr6:109557437-109558094	MCF-7	breast:	n/a	n/a
11	MAX	chr6:109557519-109557946	H1-hESC	embryonic stem cell:	n/a	n/a
12	MAX	chr6:109557475-109557994	MCF-7	breast:	n/a	n/a
13	MAX	chr6:109557508-109557951	H1-hESC	embryonic stem cell:	n/a	n/a
14	CTCF	chr6:109557506-109557975	K562	blood:	n/a	n/a
15	RAD21	chr6:109557459-109558173	MCF-7	breast:	n/a	n/a
16	TCF12	chr6:109557542-109557843	H1-hESC	embryonic stem cell:	n/a	n/a
17	BATF	chr6:109557362-109557564	GM12878	blood:	n/a	n/a
18	CBX3	chr6:109557499-109559371	K562	blood:	n/a	n/a
19	MAX	chr6:109557492-109557984	K562	blood:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:109556893..109560362-chr6:109702019..109704753,3	K562	blood:
2	chr6:109555640..109560553-chr6:109624000..109628580,4	K562	blood:
3	chr6:109554938..109560362-chr6:109702019..109707132,8	K562	blood:
4	chr6:109556933..109558499-chr6:109629340..109630936,2	K562	blood:

No data

Variant related genes	Relation type
C6orf183	TF binding region
ENSG00000201023	Chromatin interaction
ENSG00000260273	Chromatin interaction
ENSG00000203799	Chromatin interaction
ENSG00000135535	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs11153161	0.95[ASN][1000 genomes]
rs11964178	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12664455	0.81[AMR][1000 genomes]
rs1271693	0.90[ASN][1000 genomes]
rs13196590	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs13211313	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs13211944	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1741923	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17534632	1.00[YRI][hapmap]
rs34774766	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs351716	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs351717	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs351718	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs351719	1.00[CHB][hapmap];0.97[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.84[TSI][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs351720	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs351721	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs351722	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs351723	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs351726	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs351727	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs351728	1.00[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs351730	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs351731	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs351732	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs351735	0.89[ASN][1000 genomes]
rs351736	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs351737	1.00[CHB][hapmap];0.81[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.84[TSI][hapmap];0.90[ASN][1000 genomes]
rs351744	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs351746	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs351747	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs351750	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs351751	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs353052	0.89[ASN][1000 genomes]
rs377436	1.00[CHB][hapmap];0.97[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.84[TSI][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs388526	0.95[ASN][1000 genomes]
rs396635	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs408944	0.96[ASN][1000 genomes]
rs410449	0.95[ASN][1000 genomes]
rs412754	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs418093	0.93[ASN][1000 genomes]
rs421790	0.95[ASN][1000 genomes]
rs422113	0.82[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs429534	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs436880	0.96[ASN][1000 genomes]
rs446974	1.00[CHB][hapmap];0.97[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.84[TSI][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs448496	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs449736	1.00[CHB][hapmap];0.97[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.84[TSI][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4548045	0.85[AMR][1000 genomes]
rs566164	0.95[CHB][hapmap];0.81[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.84[TSI][hapmap];0.90[ASN][1000 genomes]
rs59673	0.82[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6919423	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6925339	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs830552	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs830554	1.00[CHB][hapmap];0.86[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.84[TSI][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs830556	0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9320278	0.99[ASN][1000 genomes]
rs9386774	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs9386775	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs9386779	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527657	chr6:109533385-109579675	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109546800-109557800	Weak transcription	Spleen	Spleen
2	chr6:109551200-109557800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr6:109552200-109559000	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr6:109553600-109557600	Weak transcription	Stomach Mucosa	stomach
5	chr6:109553600-109557800	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr6:109553800-109557600	Weak transcription	Hela-S3	cervix
7	chr6:109553800-109558200	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr6:109553800-109558600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:109556800-109557800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr6:109556800-109558400	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr6:109556800-109558600	Enhancers	Adipose Nuclei	Adipose
12	chr6:109556800-109562800	Enhancers	Primary hematopoietic stem cells	blood
13	chr6:109556800-109564200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr6:109557000-109557800	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr6:109557000-109560600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
16	chr6:109557200-109557600	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr6:109557200-109557800	Enhancers	Fetal Thymus	thymus
18	chr6:109557200-109558200	Enhancers	Fetal Intestine Large	intestine
19	chr6:109557200-109558400	Enhancers	H1 Cell Line	embryonic stem cell
20	chr6:109557200-109558400	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr6:109557200-109558400	Enhancers	Fetal Intestine Small	intestine
22	chr6:109557200-109559200	Enhancers	Primary B cells from peripheral blood	blood
23	chr6:109557200-109562000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr6:109557200-109565000	Enhancers	NHDF-Ad	bronchial
25	chr6:109557400-109558000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
26	chr6:109557400-109558200	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr6:109557400-109558200	Enhancers	HUES64 Cell Line	embryonic stem cell
28	chr6:109557400-109558200	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr6:109557400-109558200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
30	chr6:109557400-109558200	Enhancers	Brain Hippocampus Middle	brain
31	chr6:109557400-109558200	Enhancers	Brain Substantia Nigra	brain
32	chr6:109557400-109558200	Enhancers	Fetal Heart	heart
33	chr6:109557400-109558400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr6:109557400-109558400	Enhancers	iPS-18 Cell Line	embryonic stem cell
35	chr6:109557400-109558400	Enhancers	Primary B cells from cord blood	blood
36	chr6:109557400-109558400	Enhancers	HepG2	liver
37	chr6:109557400-109558600	Enhancers	Duodenum Mucosa	Duodenum
38	chr6:109557400-109559200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr6:109557400-109559400	Flanking Active TSS	K562	blood
40	chr6:109557400-109562000	Enhancers	Rectal Mucosa Donor 31	rectum
41	chr6:109557400-109562200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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