Variant report

Variant	rs351732
Chromosome Location	chr6:109507691-109507692
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:109506738..109509230-chr6:109702548..109705214,2	MCF-7	breast:
2	chr6:109504328..109505857-chr6:109507220..109510008,2	K562	blood:
3	chr6:109505830..109510944-chr6:109700470..109705597,10	K562	blood:
4	chr6:109505598..109510546-chr6:109701236..109705841,8	K562	blood:
5	chr6:109502825..109510460-chr6:109701859..109705678,15	MCF-7	breast:
6	chr6:109505984..109508437-chr6:109617883..109620389,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000260273	Chromatin interaction
ENSG00000135535	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs11153161	0.91[ASN][1000 genomes]
rs11964178	0.90[ASN][1000 genomes]
rs12664455	0.81[EUR][1000 genomes]
rs1271693	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13196590	0.94[ASN][1000 genomes]
rs13211313	0.90[ASN][1000 genomes]
rs13211944	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1741923	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34774766	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs351716	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs351717	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs351718	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs351719	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs351720	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs351721	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs351722	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs351723	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs351726	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs351727	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs351728	0.91[ASN][1000 genomes]
rs351730	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs351731	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs351735	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs351736	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs351737	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs351744	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs351746	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs351747	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs351750	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs351751	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs353052	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs377436	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs388526	0.91[ASN][1000 genomes]
rs396635	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs408944	0.94[ASN][1000 genomes]
rs410449	0.91[ASN][1000 genomes]
rs412754	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs418093	0.90[ASN][1000 genomes]
rs421790	0.91[ASN][1000 genomes]
rs422113	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs429534	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs436880	0.90[ASN][1000 genomes]
rs446974	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs448496	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs449736	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4548045	0.82[EUR][1000 genomes]
rs566164	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59673	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6919423	0.89[ASN][1000 genomes]
rs6925339	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs830552	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs830554	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs830556	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9320278	0.94[ASN][1000 genomes]
rs9384701	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9386774	0.90[ASN][1000 genomes]
rs9386775	0.90[ASN][1000 genomes]
rs9386779	0.84[EUR][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109504200-109509200	Weak transcription	Liver	Liver
2	chr6:109504200-109509200	Weak transcription	Brain Angular Gyrus	brain
3	chr6:109504200-109511200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr6:109504400-109508200	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr6:109504600-109508600	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr6:109504600-109508800	Weak transcription	Adipose Nuclei	Adipose
7	chr6:109504800-109509200	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr6:109504800-109509400	Enhancers	Primary hematopoietic stem cells	blood
9	chr6:109505000-109511400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr6:109505200-109507800	Weak transcription	Stomach Mucosa	stomach
11	chr6:109505400-109507800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr6:109506800-109508200	Enhancers	K562	blood
13	chr6:109507000-109508200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr6:109507600-109508200	Enhancers	Fetal Heart	heart

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