Variant report

Variant	rs421790
Chromosome Location	chr6:109543428-109543429
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:109542960..109544899-chr6:109700564..109702558,2	K562	blood:
2	chr6:109537846..109539361-chr6:109541996..109544593,2	MCF-7	breast:
3	chr6:109542871..109545801-chr6:109546672..109548924,2	K562	blood:
4	chr6:109541416..109543560-chr6:109616012..109618470,2	MCF-7	breast:
5	chr6:109541946..109544521-chr6:109546672..109551149,4	K562	blood:

Variant related genes	Relation type
ENSG00000135535	Chromatin interaction

Extended variants
information (count: 97 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs11153161	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11964178	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12176068	0.90[EUR][1000 genomes]
rs1260593	0.90[EUR][1000 genomes]
rs1269172	0.91[EUR][1000 genomes]
rs1271693	0.86[ASN][1000 genomes]
rs1271697	0.91[EUR][1000 genomes]
rs13196590	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13211313	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13211944	0.92[ASN][1000 genomes]
rs171272	0.91[EUR][1000 genomes]
rs1741921	0.90[EUR][1000 genomes]
rs1741923	0.95[ASN][1000 genomes]
rs1766813	0.84[EUR][1000 genomes]
rs1766814	0.91[EUR][1000 genomes]
rs2483913	0.90[EUR][1000 genomes]
rs34774766	0.95[ASN][1000 genomes]
rs351716	0.95[ASN][1000 genomes]
rs351717	0.95[ASN][1000 genomes]
rs351718	0.95[ASN][1000 genomes]
rs351719	0.95[ASN][1000 genomes]
rs351720	0.95[ASN][1000 genomes]
rs351721	0.95[ASN][1000 genomes]
rs351722	0.95[ASN][1000 genomes]
rs351723	0.96[ASN][1000 genomes]
rs351724	0.87[EUR][1000 genomes]
rs351725	0.87[EUR][1000 genomes]
rs351726	0.96[ASN][1000 genomes]
rs351727	0.94[ASN][1000 genomes]
rs351728	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs351730	0.94[ASN][1000 genomes]
rs351731	0.92[ASN][1000 genomes]
rs351732	0.91[ASN][1000 genomes]
rs351735	0.92[ASN][1000 genomes]
rs351736	0.92[ASN][1000 genomes]
rs351737	0.93[ASN][1000 genomes]
rs351742	0.91[EUR][1000 genomes]
rs351743	0.90[EUR][1000 genomes]
rs351744	0.98[ASN][1000 genomes]
rs351746	0.95[ASN][1000 genomes]
rs351747	0.95[ASN][1000 genomes]
rs351749	0.91[EUR][1000 genomes]
rs351750	0.95[ASN][1000 genomes]
rs351751	0.96[ASN][1000 genomes]
rs351752	0.91[EUR][1000 genomes]
rs353052	0.92[ASN][1000 genomes]
rs371960	0.91[EUR][1000 genomes]
rs377436	0.95[ASN][1000 genomes]
rs378447	0.91[EUR][1000 genomes]
rs381565	0.91[EUR][1000 genomes]
rs386696	0.90[EUR][1000 genomes]
rs388526	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs392820	0.89[EUR][1000 genomes]
rs396635	0.95[ASN][1000 genomes]
rs398944	0.91[EUR][1000 genomes]
rs399561	0.91[EUR][1000 genomes]
rs408944	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs410449	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs412754	0.95[ASN][1000 genomes]
rs418093	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs419998	0.90[EUR][1000 genomes]
rs422113	0.95[ASN][1000 genomes]
rs427960	0.91[EUR][1000 genomes]
rs429534	0.95[ASN][1000 genomes]
rs435090	0.87[EUR][1000 genomes]
rs435611	0.91[EUR][1000 genomes]
rs436880	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs437779	0.90[EUR][1000 genomes]
rs440849	0.90[EUR][1000 genomes]
rs442405	0.91[EUR][1000 genomes]
rs445796	0.90[EUR][1000 genomes]
rs446974	0.95[ASN][1000 genomes]
rs448496	0.96[ASN][1000 genomes]
rs449736	0.95[ASN][1000 genomes]
rs449850	0.91[EUR][1000 genomes]
rs455839	0.91[EUR][1000 genomes]
rs458185	0.91[EUR][1000 genomes]
rs458740	0.91[EUR][1000 genomes]
rs459956	0.91[EUR][1000 genomes]
rs461487	0.91[EUR][1000 genomes]
rs463503	0.91[EUR][1000 genomes]
rs463916	0.90[EUR][1000 genomes]
rs566164	0.93[ASN][1000 genomes]
rs59673	0.96[ASN][1000 genomes]
rs6919423	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6925339	0.95[ASN][1000 genomes]
rs830552	0.96[ASN][1000 genomes]
rs830554	0.99[ASN][1000 genomes]
rs830556	0.96[ASN][1000 genomes]
rs9320278	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9384701	0.95[ASN][1000 genomes]
rs9386774	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9386775	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9398188	0.91[EUR][1000 genomes]
rs9480910	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527657	chr6:109533385-109579675	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3413723	chr6:109541684-109544232	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109517200-109544800	Weak transcription	Psoas Muscle	Psoas
2	chr6:109535200-109544000	Weak transcription	Aorta	Aorta
3	chr6:109535200-109545800	Weak transcription	Right Atrium	heart
4	chr6:109536000-109550800	Weak transcription	HSMMtube	muscle
5	chr6:109542000-109544000	Weak transcription	K562	blood
6	chr6:109542000-109545400	Weak transcription	Fetal Thymus	thymus
7	chr6:109542400-109544000	Weak transcription	Primary T cells from cord blood	blood
8	chr6:109542400-109544000	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr6:109542400-109547800	Weak transcription	Stomach Mucosa	stomach
10	chr6:109543200-109543600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
11	chr6:109543400-109544200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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