Variant report

Variant	rs9386779
Chromosome Location	chr6:109583656-109583657
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:109575810..109578673-chr6:109582353..109584012,2	MCF-7	breast:
2	chr6:109578534..109581492-chr6:109583225..109585725,2	K562	blood:
3	chr6:109577168..109578931-chr6:109582878..109584392,2	K562	blood:

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs1008084	0.84[ASN][1000 genomes]
rs11153165	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11153166	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11153167	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11153168	0.91[ASN][1000 genomes]
rs11751953	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11757567	0.85[ASN][1000 genomes]
rs11961369	0.85[ASN][1000 genomes]
rs11966072	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12664455	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13191948	0.85[ASN][1000 genomes]
rs13196219	0.91[ASN][1000 genomes]
rs13200047	0.91[ASN][1000 genomes]
rs13211944	0.84[EUR][1000 genomes]
rs13219432	0.85[ASN][1000 genomes]
rs13219561	0.85[ASN][1000 genomes]
rs1341271	0.85[ASN][1000 genomes]
rs1546723	0.85[ASN][1000 genomes]
rs1741923	0.83[EUR][1000 genomes]
rs34774766	0.84[EUR][1000 genomes]
rs351716	0.84[AMR][1000 genomes]
rs351717	0.84[AMR][1000 genomes]
rs351718	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs351719	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs351720	0.84[AMR][1000 genomes]
rs351721	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs351722	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs351723	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs351726	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs351727	0.84[AMR][1000 genomes]
rs351730	0.84[EUR][1000 genomes]
rs351731	0.84[EUR][1000 genomes]
rs351732	0.84[EUR][1000 genomes]
rs351735	0.80[EUR][1000 genomes]
rs351736	0.80[EUR][1000 genomes]
rs351737	0.80[EUR][1000 genomes]
rs351744	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs351746	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs351747	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs351750	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs351751	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs353052	0.80[EUR][1000 genomes]
rs377436	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs396635	0.85[EUR][1000 genomes]
rs412754	0.85[EUR][1000 genomes]
rs422113	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs429534	0.84[EUR][1000 genomes]
rs446974	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs448496	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs449736	0.85[EUR][1000 genomes]
rs4548045	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5005289	0.85[ASN][1000 genomes]
rs55677234	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59272337	0.89[ASN][1000 genomes]
rs59673	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6568569	0.85[ASN][1000 genomes]
rs6568570	0.85[ASN][1000 genomes]
rs6568571	0.85[ASN][1000 genomes]
rs6925339	0.85[EUR][1000 genomes]
rs7748918	0.85[ASN][1000 genomes]
rs7773490	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs830552	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs830554	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs830556	0.84[AMR][1000 genomes]
rs9374076	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9374080	0.85[ASN][1000 genomes]
rs9374081	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9384701	0.85[AMR][1000 genomes]
rs9386795	0.85[ASN][1000 genomes]
rs9386796	0.85[ASN][1000 genomes]
rs9400265	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9400272	0.85[ASN][1000 genomes]
rs9400273	0.85[ASN][1000 genomes]
rs9480924	0.85[ASN][1000 genomes]
rs9487023	0.83[ASN][1000 genomes]
rs9487048	0.85[ASN][1000 genomes]
rs9487049	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9487051	0.85[ASN][1000 genomes]
rs9487052	0.87[ASN][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109564000-109590400	Weak transcription	Psoas Muscle	Psoas
2	chr6:109572800-109590400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr6:109572800-109595200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:109573200-109589800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr6:109573600-109590200	Weak transcription	Gastric	stomach
6	chr6:109575800-109589200	Weak transcription	Pancreas	Pancrea
7	chr6:109579600-109584200	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr6:109581800-109583800	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr6:109581800-109588800	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr6:109582800-109584000	Enhancers	Ovary	ovary
11	chr6:109583000-109587600	Strong transcription	HepG2	liver
12	chr6:109583200-109584000	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr6:109583400-109587200	Weak transcription	Adipose Nuclei	Adipose
14	chr6:109583400-109587600	Strong transcription	Placenta	Placenta
15	chr6:109583400-109590400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr6:109583600-109583800	Enhancers	HSMM	muscle
17	chr6:109583600-109590200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr6:109583600-109590400	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr6:109583600-109591400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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