Variant report

Variant	rs6568570
Chromosome Location	chr6:109613241-109613242
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1008084	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11153165	0.92[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs11153166	0.92[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs11153167	0.87[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs11153168	0.92[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs11751953	0.94[ASN][1000 genomes]
rs11757567	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11961369	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11966072	0.94[ASN][1000 genomes]
rs12664455	0.90[ASN][1000 genomes]
rs13191948	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13196219	0.94[ASN][1000 genomes]
rs13200047	0.92[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs13203155	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13219432	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13219561	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1341271	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1546723	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4548045	0.85[ASN][1000 genomes]
rs5005289	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55677234	0.87[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs59272337	0.92[ASN][1000 genomes]
rs6568569	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6568571	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7748918	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7773490	0.87[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9374076	0.94[ASN][1000 genomes]
rs9374080	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9374081	0.94[ASN][1000 genomes]
rs9386779	0.85[ASN][1000 genomes]
rs9386795	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9386796	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9400265	0.94[ASN][1000 genomes]
rs9400272	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9400273	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9480924	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487023	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9487048	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487049	0.92[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9487051	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487052	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109587600-109614600	Weak transcription	HepG2	liver
2	chr6:109591600-109615200	Weak transcription	Placenta	Placenta
3	chr6:109606200-109614400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr6:109608400-109613400	Weak transcription	Fetal Intestine Small	intestine
5	chr6:109611200-109615200	Weak transcription	Esophagus	oesophagus
6	chr6:109611200-109618200	Weak transcription	Gastric	stomach
7	chr6:109612000-109613800	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr6:109612600-109613600	Enhancers	Fetal Muscle Leg	muscle
9	chr6:109612600-109615400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:109612600-109615600	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr6:109612800-109613600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr6:109612800-109614000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr6:109612800-109614200	Enhancers	Stomach Mucosa	stomach
14	chr6:109612800-109614800	Enhancers	Hela-S3	cervix
15	chr6:109612800-109615200	Enhancers	Rectal Mucosa Donor 31	rectum
16	chr6:109613000-109614200	Enhancers	Brain Hippocampus Middle	brain
17	chr6:109613000-109615600	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr6:109613000-109619000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr6:109613200-109613400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
20	chr6:109613200-109613400	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr6:109613200-109613400	Enhancers	Right Atrium	heart
22	chr6:109613200-109613800	Enhancers	Brain Anterior Caudate	brain
23	chr6:109613200-109614000	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr6:109613200-109614000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr6:109613200-109614000	Enhancers	Brain Angular Gyrus	brain
26	chr6:109613200-109614000	Enhancers	Brain Inferior Temporal Lobe	brain
27	chr6:109613200-109614000	Enhancers	Brain Substantia Nigra	brain
28	chr6:109613200-109614000	Enhancers	Duodenum Mucosa	Duodenum
29	chr6:109613200-109614000	Enhancers	Pancreas	Pancrea
30	chr6:109613200-109614000	Enhancers	Psoas Muscle	Psoas
31	chr6:109613200-109614200	Enhancers	Brain Cingulate Gyrus	brain
32	chr6:109613200-109614400	Enhancers	K562	blood
33	chr6:109613200-109615600	Enhancers	Left Ventricle	heart
34	chr6:109613200-109619000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links