Variant report

Variant	rs5005289
Chromosome Location	chr6:109617673-109617674
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:109616158..109619267-chr6:109664026..109668209,4	MCF-7	breast:
2	chr6:109616179..109618619-chr6:109761422..109762940,2	K562	blood:
3	chr6:109561591..109563297-chr6:109615936..109618604,2	K562	blood:
4	chr6:109616718..109618232-chr6:109703193..109705210,2	K562	blood:
5	chr6:109541416..109543560-chr6:109616012..109618470,2	MCF-7	breast:
6	chr6:109574650..109576524-chr6:109616108..109618484,2	MCF-7	breast:
7	chr6:109616026..109618263-chr6:109705569..109707885,2	MCF-7	breast:
8	chr6:109607848..109610132-chr6:109616518..109618526,2	MCF-7	breast:
9	chr6:109609293..109611431-chr6:109617491..109619119,2	MCF-7	breast:
10	chr6:109617424..109619147-chr6:109701372..109704187,2	MCF-7	breast:
11	chr6:109617393..109622773-chr6:109623823..109627648,7	K562	blood:
12	chr6:109617102..109620529-chr6:109701283..109704576,4	MCF-7	breast:
13	chr6:109573548..109576150-chr6:109616367..109617967,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000233908	Chromatin interaction
ENSG00000201023	Chromatin interaction
ENSG00000135587	Chromatin interaction
ENSG00000185250	Chromatin interaction
ENSG00000260273	Chromatin interaction
ENSG00000203799	Chromatin interaction
ENSG00000135535	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1008084	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11153165	0.94[ASN][1000 genomes]
rs11153166	0.94[ASN][1000 genomes]
rs11153167	0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs11153168	0.80[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs11751953	0.94[ASN][1000 genomes]
rs11757567	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11961369	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11966072	0.94[ASN][1000 genomes]
rs12664455	0.90[ASN][1000 genomes]
rs13191948	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13196219	0.94[ASN][1000 genomes]
rs13200047	0.80[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs13203155	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13219432	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13219561	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1341271	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1546723	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4548045	0.85[ASN][1000 genomes]
rs55677234	0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs59272337	0.92[ASN][1000 genomes]
rs6568569	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6568570	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6568571	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7748918	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7773490	0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9374076	0.94[ASN][1000 genomes]
rs9374080	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9374081	0.94[ASN][1000 genomes]
rs9386779	0.85[ASN][1000 genomes]
rs9386795	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9386796	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9400265	0.94[ASN][1000 genomes]
rs9400272	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9400273	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9480924	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487023	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9487048	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487049	0.94[ASN][1000 genomes]
rs9487051	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487052	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109611200-109618200	Weak transcription	Gastric	stomach
2	chr6:109613000-109619000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr6:109613200-109619000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr6:109613400-109620200	Weak transcription	Right Atrium	heart
5	chr6:109613600-109617800	Weak transcription	Fetal Muscle Leg	muscle
6	chr6:109613600-109620600	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr6:109613800-109618200	Weak transcription	Brain Anterior Caudate	brain
8	chr6:109614000-109618200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr6:109614000-109618400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr6:109614000-109618600	Weak transcription	Brain Angular Gyrus	brain
11	chr6:109614000-109619000	Weak transcription	Brain Substantia Nigra	brain
12	chr6:109614000-109622000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr6:109614200-109618400	Weak transcription	Brain Cingulate Gyrus	brain
14	chr6:109614200-109619000	Weak transcription	Brain Hippocampus Middle	brain
15	chr6:109614400-109621000	Enhancers	Primary hematopoietic stem cells	blood
16	chr6:109614600-109619400	Enhancers	HepG2	liver
17	chr6:109614800-109624400	Enhancers	K562	blood
18	chr6:109615000-109619600	Enhancers	Fetal Intestine Large	intestine
19	chr6:109615200-109619400	Enhancers	Stomach Mucosa	stomach
20	chr6:109615200-109619800	Enhancers	Fetal Intestine Small	intestine
21	chr6:109615400-109618400	Weak transcription	Small Intestine	intestine
22	chr6:109615400-109624600	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr6:109615600-109617800	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr6:109615600-109617800	Weak transcription	NHDF-Ad	bronchial
25	chr6:109615600-109618000	Weak transcription	Placenta	Placenta
26	chr6:109615600-109618200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr6:109615600-109618200	Weak transcription	Fetal Muscle Trunk	muscle
28	chr6:109615600-109618200	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr6:109615600-109618400	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr6:109615600-109618400	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr6:109615600-109619000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr6:109615600-109619200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr6:109615600-109619200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr6:109615600-109619400	Weak transcription	Primary monocytes fromperipheralblood	blood
35	chr6:109615600-109622200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr6:109615600-109622600	Weak transcription	Left Ventricle	heart
37	chr6:109615600-109622600	Weak transcription	Right Ventricle	heart
38	chr6:109615800-109617800	Weak transcription	Duodenum Mucosa	Duodenum
39	chr6:109615800-109618400	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr6:109615800-109619200	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr6:109615800-109619200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr6:109615800-109620200	Weak transcription	Psoas Muscle	Psoas
43	chr6:109616000-109618000	Weak transcription	Fetal Heart	heart
44	chr6:109616000-109618200	Weak transcription	Colon Smooth Muscle	Colon
45	chr6:109616200-109624400	Weak transcription	Hela-S3	cervix
46	chr6:109616800-109617800	Weak transcription	Colonic Mucosa	Colon
47	chr6:109617200-109618200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
48	chr6:109617200-109618200	Active TSS	Pancreatic Islets	Pancreatic Islet
49	chr6:109617200-109619600	Enhancers	Rectal Mucosa Donor 29	rectum
50	chr6:109617200-109619600	Enhancers	Rectal Mucosa Donor 31	rectum

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