Variant report

Variant	rs13196219
Chromosome Location	chr6:109635787-109635788
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:109631513..109637347-chr6:109638223..109642715,6	K562	blood:
2	chr6:109635254..109638120-chr6:109702756..109704791,3	MCF-7	breast:
3	chr6:109627945..109629933-chr6:109634086..109636945,2	MCF-7	breast:
4	chr6:109635700..109637262-chr6:109660535..109662631,2	K562	blood:

Variant related genes	Relation type
ENSG00000135535	Chromatin interaction
ENSG00000260273	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs1008084	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11153165	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11153166	0.87[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11153167	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11153168	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11751953	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11757567	0.94[ASN][1000 genomes]
rs11961369	0.94[ASN][1000 genomes]
rs11966072	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12664455	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs13191948	0.94[ASN][1000 genomes]
rs13195500	0.88[EUR][1000 genomes]
rs13196590	0.91[CEU][hapmap]
rs13200047	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13202939	0.91[CEU][hapmap];0.89[YRI][hapmap];0.88[EUR][1000 genomes]
rs13203155	0.88[ASN][1000 genomes]
rs13219432	0.94[ASN][1000 genomes]
rs13219561	0.94[ASN][1000 genomes]
rs1341271	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1546723	0.94[ASN][1000 genomes]
rs2884036	0.91[CEU][hapmap];0.88[EUR][1000 genomes]
rs351724	0.84[CEU][hapmap]
rs351725	0.84[CEU][hapmap]
rs351728	0.83[CEU][hapmap]
rs351736	0.88[CEU][hapmap]
rs351737	0.87[CEU][hapmap]
rs35757653	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35849756	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4301336	0.91[CEU][hapmap];0.89[YRI][hapmap];0.87[EUR][1000 genomes]
rs4548045	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs5005289	0.94[ASN][1000 genomes]
rs55677234	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs566164	0.87[CEU][hapmap]
rs59272337	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59502176	0.88[EUR][1000 genomes]
rs6568569	0.94[ASN][1000 genomes]
rs6568570	0.94[ASN][1000 genomes]
rs6568571	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6919423	0.83[CEU][hapmap]
rs6925339	0.87[CEU][hapmap]
rs7748918	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7773490	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9374076	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9374080	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs9374081	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9386779	0.91[ASN][1000 genomes]
rs9386781	0.80[CEU][hapmap]
rs9386795	0.94[ASN][1000 genomes]
rs9386796	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs9400265	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9400272	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs9400273	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs9400276	0.91[CEU][hapmap];0.88[EUR][1000 genomes]
rs9480924	0.82[CHB][hapmap];0.82[JPT][hapmap];0.94[ASN][1000 genomes]
rs9487023	0.86[ASN][1000 genomes]
rs9487048	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs9487049	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487051	0.94[ASN][1000 genomes]
rs9487052	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5435	chr6:109633035-109669127	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109619400-109638000	Weak transcription	HepG2	liver
2	chr6:109626200-109638800	Weak transcription	Thymus	Thymus
3	chr6:109627600-109639000	Weak transcription	Left Ventricle	heart
4	chr6:109629600-109639800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:109629600-109654000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:109630800-109636200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr6:109630800-109636200	Weak transcription	Fetal Intestine Large	intestine
8	chr6:109631000-109636200	Weak transcription	Fetal Intestine Small	intestine
9	chr6:109631600-109636200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr6:109634000-109636200	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr6:109634000-109636400	Enhancers	Fetal Muscle Trunk	muscle
12	chr6:109634200-109635800	Enhancers	Psoas Muscle	Psoas
13	chr6:109634200-109641200	Enhancers	Fetal Muscle Leg	muscle
14	chr6:109634400-109635800	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr6:109634400-109636800	Enhancers	Brain Substantia Nigra	brain
16	chr6:109634400-109644000	Weak transcription	Spleen	Spleen
17	chr6:109634600-109637000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr6:109634800-109636600	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr6:109635200-109639800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr6:109635200-109639800	Enhancers	Brain Cingulate Gyrus	brain
21	chr6:109635200-109641200	Enhancers	Brain Hippocampus Middle	brain
22	chr6:109635400-109636000	Enhancers	Brain Inferior Temporal Lobe	brain
23	chr6:109635400-109637000	Enhancers	Brain Angular Gyrus	brain
24	chr6:109635600-109635800	Enhancers	Pancreas	Pancrea
25	chr6:109635600-109636600	Weak transcription	Brain Germinal Matrix	brain
26	chr6:109635600-109637800	Weak transcription	Liver	Liver
27	chr6:109635600-109639400	Weak transcription	K562	blood
28	chr6:109635600-109646600	Weak transcription	HSMMtube	muscle

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