Variant report

Variant	rs35849756
Chromosome Location	chr6:109644610-109644611
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:109627149..109629191-chr6:109643019..109645963,3	K562	blood:
2	chr6:109627149..109629191-chr6:109642784..109645963,3	K562	blood:
3	chr6:109640571..109644823-chr6:109646386..109650384,4	MCF-7	breast:
4	chr6:109644113..109647625-chr6:109647816..109651076,4	K562	blood:
5	chr6:109629382..109632123-chr6:109644034..109645536,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000203799	Chromatin interaction
ENSG00000218632	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11153168	0.88[EUR][1000 genomes]
rs11751953	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11966072	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13195500	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13196219	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13200047	0.88[EUR][1000 genomes]
rs13202939	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2884036	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35757653	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4301336	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59502176	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9374081	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9400276	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5435	chr6:109633035-109669127	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109629600-109654000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:109635600-109646600	Weak transcription	HSMMtube	muscle
3	chr6:109637400-109649800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:109638400-109645400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr6:109640600-109646400	Weak transcription	Brain Angular Gyrus	brain
6	chr6:109640600-109648800	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr6:109640800-109648600	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr6:109641000-109653600	Weak transcription	Small Intestine	intestine
9	chr6:109641800-109647200	Weak transcription	Fetal Intestine Large	intestine
10	chr6:109642000-109647400	Weak transcription	Fetal Intestine Small	intestine
11	chr6:109643000-109645600	Enhancers	Primary B cells from cord blood	blood
12	chr6:109643400-109646600	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr6:109643600-109645400	Enhancers	Primary hematopoietic stem cells	blood
14	chr6:109643800-109647800	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr6:109644000-109644800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
16	chr6:109644000-109644800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr6:109644000-109644800	Enhancers	Thymus	Thymus
18	chr6:109644000-109644800	Enhancers	Spleen	Spleen
19	chr6:109644000-109644800	Enhancers	GM12878-XiMat	blood
20	chr6:109644000-109644800	Enhancers	HMEC	breast
21	chr6:109644000-109644800	Enhancers	HUVEC	blood vessel
22	chr6:109644000-109645000	Enhancers	Primary B cells from peripheral blood	blood
23	chr6:109644000-109645000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr6:109644000-109645000	Enhancers	NHEK	skin
25	chr6:109644000-109645200	Enhancers	Fetal Muscle Leg	muscle
26	chr6:109644000-109645200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
27	chr6:109644000-109645400	Enhancers	Fetal Thymus	thymus
28	chr6:109644000-109645400	Enhancers	Left Ventricle	heart
29	chr6:109644200-109644800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr6:109644200-109644800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
31	chr6:109644200-109645000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr6:109644200-109645400	Enhancers	Aorta	Aorta
33	chr6:109644200-109645400	Genic enhancers	K562	blood
34	chr6:109644400-109644800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr6:109644400-109644800	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
36	chr6:109644400-109644800	Enhancers	Adipose Nuclei	Adipose
37	chr6:109644400-109644800	Enhancers	Fetal Kidney	kidney
38	chr6:109644400-109644800	Enhancers	Placenta	Placenta
39	chr6:109644400-109644800	Weak transcription	Lung	lung
40	chr6:109644400-109645000	Enhancers	Duodenum Smooth Muscle	Duodenum
41	chr6:109644600-109644800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr6:109644600-109644800	Enhancers	Brain Anterior Caudate	brain
43	chr6:109644600-109644800	Enhancers	Brain Cingulate Gyrus	brain
44	chr6:109644600-109645000	Enhancers	Primary hematopoietic stem cells short term culture	blood
45	chr6:109644600-109645200	Enhancers	Fetal Muscle Trunk	muscle
46	chr6:109644600-109645200	Weak transcription	Right Ventricle	heart
47	chr6:109644600-109646600	Weak transcription	Brain Hippocampus Middle	brain
48	chr6:109644600-109646600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
49	chr6:109644600-109675200	Weak transcription	Primary T cells from cord blood	blood

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