Variant report

Variant	rs13195500
Chromosome Location	chr6:109648204-109648205
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11153168	0.87[EUR][1000 genomes]
rs11751953	0.88[EUR][1000 genomes]
rs11966072	0.88[EUR][1000 genomes]
rs13196219	0.88[EUR][1000 genomes]
rs13200047	0.87[EUR][1000 genomes]
rs13202939	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2884036	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35757653	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35849756	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4301336	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59502176	0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9374081	0.88[EUR][1000 genomes]
rs9400276	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5435	chr6:109633035-109669127	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv969434	chr6:109645476-109649777	Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109629600-109654000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:109637400-109649800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:109640600-109648800	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr6:109640800-109648600	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr6:109641000-109653600	Weak transcription	Small Intestine	intestine
6	chr6:109644600-109675200	Weak transcription	Primary T cells from cord blood	blood
7	chr6:109644800-109657400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr6:109645400-109653600	Weak transcription	Spleen	Spleen
9	chr6:109645400-109662400	Weak transcription	Aorta	Aorta
10	chr6:109647000-109649600	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr6:109647200-109651600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr6:109647600-109648800	Weak transcription	Fetal Intestine Large	intestine
13	chr6:109647600-109649200	Enhancers	K562	blood
14	chr6:109647600-109651400	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr6:109647800-109651200	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr6:109648200-109648600	Weak transcription	Fetal Intestine Small	intestine

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links