Variant report

Variant	rs7773490
Chromosome Location	chr6:109623048-109623049
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:109556981..109561984-chr6:109619235..109623303,5	K562	blood:
2	chr6:109618654..109620547-chr6:109621198..109623394,2	K562	blood:
3	chr6:109622184..109625668-chr6:109702158..109705094,3	MCF-7	breast:
4	chr6:109619154..109621765-chr6:109622186..109624973,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000260273	Chromatin interaction
ENSG00000135535	Chromatin interaction
ENSG00000243587	Chromatin interaction

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs1008084	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11153165	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11153166	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.92[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11153167	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11153168	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11751953	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11757567	0.87[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs11961369	0.82[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs11966072	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12664455	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13191948	0.94[ASN][1000 genomes]
rs13196219	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13200047	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13202939	0.86[CHB][hapmap]
rs13203155	0.81[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs13219432	0.80[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs13219561	0.87[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs1341271	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.87[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs1546723	0.94[ASN][1000 genomes]
rs351716	0.83[CEU][hapmap]
rs351717	0.83[CEU][hapmap]
rs351718	0.80[EUR][1000 genomes]
rs351719	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs351720	0.88[CEU][hapmap]
rs351721	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs351722	0.81[EUR][1000 genomes]
rs351723	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs351724	0.81[CEU][hapmap]
rs351725	0.81[CEU][hapmap]
rs351726	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs351727	0.88[CEU][hapmap]
rs351730	0.88[CEU][hapmap]
rs351735	0.81[EUR][1000 genomes]
rs351736	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs351737	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs351744	0.81[EUR][1000 genomes]
rs351751	0.81[EUR][1000 genomes]
rs353052	0.81[EUR][1000 genomes]
rs377436	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs396635	0.81[EUR][1000 genomes]
rs412754	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs422113	0.83[CEU][hapmap]
rs429534	0.80[EUR][1000 genomes]
rs4301336	0.86[CHB][hapmap]
rs4427037	0.81[CEU][hapmap]
rs446974	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs449736	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs4548045	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs5005289	0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs55677234	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs566164	0.95[CEU][hapmap];0.82[EUR][1000 genomes]
rs59272337	0.98[ASN][1000 genomes]
rs59673	0.83[CEU][hapmap];0.80[EUR][1000 genomes]
rs6568569	0.87[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs6568570	0.87[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs6568571	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs6925339	0.91[CEU][hapmap];0.87[EUR][1000 genomes]
rs7748918	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs830552	0.81[EUR][1000 genomes]
rs830554	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs9374069	0.80[CEU][hapmap]
rs9374070	0.83[CEU][hapmap]
rs9374071	0.81[CEU][hapmap]
rs9374072	0.81[CEU][hapmap]
rs9374076	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9374080	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.87[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9374081	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9384703	0.83[CEU][hapmap]
rs9386779	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9386781	0.81[CEU][hapmap]
rs9386784	0.83[CEU][hapmap]
rs9386795	0.87[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9386796	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.87[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9398191	0.83[CEU][hapmap]
rs9398192	0.81[CEU][hapmap]
rs9400265	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9400272	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9400273	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs9400276	0.86[CHB][hapmap]
rs9480924	0.91[CHB][hapmap];0.82[JPT][hapmap];0.94[ASN][1000 genomes]
rs9487023	0.86[ASN][1000 genomes]
rs9487048	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9487049	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487051	0.82[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9487052	0.86[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs949881	0.83[CEU][hapmap]
rs949882	0.83[CEU][hapmap]

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109614800-109624400	Enhancers	K562	blood
2	chr6:109615400-109624600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr6:109616200-109624400	Weak transcription	Hela-S3	cervix
4	chr6:109617800-109623200	Enhancers	Fetal Muscle Leg	muscle
5	chr6:109618200-109623400	Enhancers	Colon Smooth Muscle	Colon
6	chr6:109618800-109624800	Weak transcription	Duodenum Mucosa	Duodenum
7	chr6:109619200-109625800	Weak transcription	Brain Angular Gyrus	brain
8	chr6:109619200-109626800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr6:109619400-109623200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr6:109619400-109624600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:109619400-109625000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr6:109619400-109629200	Weak transcription	Gastric	stomach
13	chr6:109619400-109638000	Weak transcription	HepG2	liver
14	chr6:109619600-109623200	Weak transcription	Small Intestine	intestine
15	chr6:109619600-109624800	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr6:109619600-109625200	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr6:109619600-109625400	Enhancers	Stomach Smooth Muscle	stomach
18	chr6:109619600-109625600	Weak transcription	Lung	lung
19	chr6:109619600-109626000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr6:109620000-109625000	Weak transcription	Primary B cells from cord blood	blood
21	chr6:109620200-109623200	Enhancers	Psoas Muscle	Psoas
22	chr6:109620200-109623400	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chr6:109620400-109623600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr6:109620800-109623400	Enhancers	Pancreatic Islets	Pancreatic Islet
25	chr6:109621200-109623800	Enhancers	Stomach Mucosa	stomach
26	chr6:109621400-109623400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr6:109621400-109629600	Enhancers	Primary hematopoietic stem cells	blood
28	chr6:109621600-109625200	Weak transcription	Spleen	Spleen
29	chr6:109621600-109625600	Weak transcription	Right Atrium	heart
30	chr6:109621600-109634000	Weak transcription	Fetal Muscle Trunk	muscle
31	chr6:109621800-109623200	Enhancers	Cortex derived primary cultured neurospheres	brain
32	chr6:109621800-109624400	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr6:109621800-109624600	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr6:109621800-109624800	Weak transcription	Primary B cells from peripheral blood	blood
35	chr6:109621800-109624800	Weak transcription	Fetal Thymus	thymus
36	chr6:109621800-109625000	Weak transcription	Monocytes-CD14+_RO01746	blood
37	chr6:109621800-109625200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr6:109622000-109623200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr6:109622000-109623400	Enhancers	Fetal Heart	heart
40	chr6:109622000-109625800	Enhancers	Primary hematopoietic stem cells short term culture	blood
41	chr6:109622200-109623400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr6:109622200-109623600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr6:109622400-109624600	Weak transcription	Fetal Intestine Large	intestine
44	chr6:109622400-109625200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr6:109622400-109626200	Enhancers	Placenta	Placenta
46	chr6:109622600-109623600	Enhancers	Left Ventricle	heart
47	chr6:109622600-109624600	Weak transcription	Fetal Intestine Small	intestine
48	chr6:109622600-109624800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr6:109622800-109623200	Enhancers	Brain Anterior Caudate	brain
50	chr6:109622800-109623200	Enhancers	Brain Hippocampus Middle	brain

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