Variant report

Variant	rs11961369
Chromosome Location	chr6:109624771-109624772
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:4)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:4 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TRIM28	chr6:109624749-109626180	K562	blood:	n/a	n/a
2	TCF7L2	chr6:109624758-109625153	Hela-S3	cervix:	n/a	n/a
3	TEAD4	chr6:109624744-109626315	K562	blood:	n/a	n/a
4	CBX3	chr6:109624641-109626455	K562	blood:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:109623091..109628183-chr6:109700606..109706462,9	K562	blood:
2	chr6:109555640..109560553-chr6:109624000..109628580,4	K562	blood:
3	chr6:109623746..109625263-chr6:109628123..109630735,2	K562	blood:
4	chr6:109622184..109625668-chr6:109702158..109705094,3	MCF-7	breast:
5	chr6:109619154..109621765-chr6:109622186..109624973,2	MCF-7	breast:
6	chr6:109624351..109631970-chr6:109702157..109706422,11	K562	blood:

No data

Variant related genes	Relation type
ENSG00000201023	TF binding region
ENSG00000203799	Chromatin interaction
ENSG00000260273	Chromatin interaction
ENSG00000135535	Chromatin interaction
ENSG00000243587	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1008084	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11153165	0.94[ASN][1000 genomes]
rs11153166	0.94[ASN][1000 genomes]
rs11153167	0.82[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs11153168	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs11751953	0.94[ASN][1000 genomes]
rs11757567	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11966072	0.94[ASN][1000 genomes]
rs12664455	0.90[ASN][1000 genomes]
rs13191948	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13196219	0.94[ASN][1000 genomes]
rs13200047	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs13203155	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13219432	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13219561	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1341271	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1546723	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4548045	0.85[ASN][1000 genomes]
rs5005289	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55677234	0.82[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs59272337	0.92[ASN][1000 genomes]
rs6568569	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6568570	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6568571	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7748918	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7773490	0.82[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9374076	0.94[ASN][1000 genomes]
rs9374080	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9374081	0.94[ASN][1000 genomes]
rs9386779	0.85[ASN][1000 genomes]
rs9386795	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9386796	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9400265	0.94[ASN][1000 genomes]
rs9400272	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9400273	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9480924	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487023	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9487048	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487049	0.94[ASN][1000 genomes]
rs9487051	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487052	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109618800-109624800	Weak transcription	Duodenum Mucosa	Duodenum
2	chr6:109619200-109625800	Weak transcription	Brain Angular Gyrus	brain
3	chr6:109619200-109626800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr6:109619400-109625000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr6:109619400-109629200	Weak transcription	Gastric	stomach
6	chr6:109619400-109638000	Weak transcription	HepG2	liver
7	chr6:109619600-109624800	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr6:109619600-109625200	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr6:109619600-109625400	Enhancers	Stomach Smooth Muscle	stomach
10	chr6:109619600-109625600	Weak transcription	Lung	lung
11	chr6:109619600-109626000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr6:109620000-109625000	Weak transcription	Primary B cells from cord blood	blood
13	chr6:109621400-109629600	Enhancers	Primary hematopoietic stem cells	blood
14	chr6:109621600-109625200	Weak transcription	Spleen	Spleen
15	chr6:109621600-109625600	Weak transcription	Right Atrium	heart
16	chr6:109621600-109634000	Weak transcription	Fetal Muscle Trunk	muscle
17	chr6:109621800-109624800	Weak transcription	Primary B cells from peripheral blood	blood
18	chr6:109621800-109624800	Weak transcription	Fetal Thymus	thymus
19	chr6:109621800-109625000	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr6:109621800-109625200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr6:109622000-109625800	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr6:109622400-109625200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr6:109622400-109626200	Enhancers	Placenta	Placenta
24	chr6:109622600-109624800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr6:109623000-109625000	Weak transcription	Brain Substantia Nigra	brain
26	chr6:109623000-109625400	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr6:109623000-109625600	Weak transcription	Adipose Nuclei	Adipose
28	chr6:109623200-109624800	Weak transcription	Fetal Muscle Leg	muscle
29	chr6:109623200-109625000	Weak transcription	Psoas Muscle	Psoas
30	chr6:109623200-109625400	Weak transcription	Brain Anterior Caudate	brain
31	chr6:109623200-109625800	Weak transcription	Brain Hippocampus Middle	brain
32	chr6:109623400-109625000	Weak transcription	Right Ventricle	heart
33	chr6:109623400-109625000	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr6:109623400-109625000	Weak transcription	Small Intestine	intestine
35	chr6:109623400-109625200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr6:109623400-109625200	Weak transcription	Colon Smooth Muscle	Colon
37	chr6:109623400-109625200	Weak transcription	Fetal Heart	heart
38	chr6:109623400-109625400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr6:109623600-109625000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr6:109623600-109625000	Weak transcription	Left Ventricle	heart
41	chr6:109623600-109625000	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr6:109623600-109625200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr6:109623600-109625400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr6:109623600-109629400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr6:109623800-109624800	Weak transcription	Stomach Mucosa	stomach
46	chr6:109624000-109627000	Weak transcription	Pancreatic Islets	Pancreatic Islet
47	chr6:109624400-109626000	Enhancers	Hela-S3	cervix
48	chr6:109624400-109626400	Flanking Active TSS	K562	blood
49	chr6:109624400-109626600	Enhancers	Rectal Mucosa Donor 31	rectum
50	chr6:109624600-109625600	Enhancers	Aorta	Aorta

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