Variant report

Variant	rs11153166
Chromosome Location	chr6:109622494-109622495
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:109618748..109622933-chr6:109702458..109706144,5	K562	blood:
2	chr6:109556981..109561984-chr6:109619235..109623303,5	K562	blood:
3	chr6:109618654..109620547-chr6:109621198..109623394,2	K562	blood:
4	chr6:109622184..109625668-chr6:109702158..109705094,3	MCF-7	breast:
5	chr6:109619154..109621765-chr6:109622186..109624973,2	MCF-7	breast:
6	chr6:109617393..109622773-chr6:109623823..109627648,7	K562	blood:

Variant related genes	Relation type
ENSG00000201023	Chromatin interaction
ENSG00000243587	Chromatin interaction
ENSG00000260273	Chromatin interaction
ENSG00000135535	Chromatin interaction

Extended variants
information (count: 87 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs1008084	0.81[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.81[YRI][hapmap];0.92[ASN][1000 genomes]
rs11153165	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11153167	0.85[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11153168	0.92[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.88[YRI][hapmap];0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11751953	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11757567	0.92[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs11961369	0.94[ASN][1000 genomes]
rs11966072	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];0.82[JPT][hapmap];0.94[TSI][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12664455	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13191948	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs13196219	0.87[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13196590	0.80[TSI][hapmap]
rs13200047	0.92[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];0.82[JPT][hapmap];0.97[LWK][hapmap];0.93[MEX][hapmap];0.86[MKK][hapmap];0.97[TSI][hapmap];0.88[YRI][hapmap];0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13202939	0.88[TSI][hapmap]
rs13203155	0.88[ASN][1000 genomes]
rs13219432	0.94[ASN][1000 genomes]
rs13219561	0.92[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs1341271	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs1546723	0.94[ASN][1000 genomes]
rs2884036	0.84[GIH][hapmap];0.84[TSI][hapmap]
rs351716	0.83[CEU][hapmap]
rs351717	0.83[CEU][hapmap]
rs351718	0.80[EUR][1000 genomes]
rs351719	0.87[CEU][hapmap];0.84[GIH][hapmap];0.88[TSI][hapmap];0.81[EUR][1000 genomes]
rs351720	0.87[CEU][hapmap]
rs351721	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs351722	0.81[EUR][1000 genomes]
rs351723	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs351726	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs351727	0.87[CEU][hapmap]
rs351730	0.87[CEU][hapmap]
rs351735	0.81[EUR][1000 genomes]
rs351736	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs351737	0.91[CEU][hapmap];0.88[TSI][hapmap];0.81[EUR][1000 genomes]
rs351744	0.81[EUR][1000 genomes]
rs351751	0.81[EUR][1000 genomes]
rs353052	0.81[EUR][1000 genomes]
rs377436	0.87[CEU][hapmap];0.84[GIH][hapmap];0.88[TSI][hapmap];0.81[EUR][1000 genomes]
rs396635	0.81[EUR][1000 genomes]
rs412754	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs422113	0.83[CEU][hapmap];0.84[GIH][hapmap];0.88[TSI][hapmap]
rs429534	0.80[EUR][1000 genomes]
rs4301336	0.88[TSI][hapmap]
rs4427037	0.83[CEU][hapmap]
rs446974	0.87[CEU][hapmap];0.84[GIH][hapmap];0.88[TSI][hapmap];0.81[EUR][1000 genomes]
rs449736	0.87[CEU][hapmap];0.84[GIH][hapmap];0.88[TSI][hapmap];0.81[EUR][1000 genomes]
rs4548045	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs5005289	0.94[ASN][1000 genomes]
rs55677234	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs566164	0.95[CEU][hapmap];0.88[TSI][hapmap];0.82[EUR][1000 genomes]
rs59272337	0.98[ASN][1000 genomes]
rs59673	0.83[CEU][hapmap];0.84[GIH][hapmap];0.88[TSI][hapmap];0.80[EUR][1000 genomes]
rs6568569	0.92[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs6568570	0.92[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs6568571	1.00[CHB][hapmap];0.82[JPT][hapmap];0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs6925339	0.91[CEU][hapmap];0.84[GIH][hapmap];0.94[TSI][hapmap];0.87[EUR][1000 genomes]
rs7748918	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];0.89[YRI][hapmap];0.88[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7773490	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.92[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs830552	0.81[EUR][1000 genomes]
rs830554	0.87[CEU][hapmap];0.84[GIH][hapmap];0.88[TSI][hapmap];0.81[EUR][1000 genomes]
rs9374069	0.82[CEU][hapmap]
rs9374070	0.83[CEU][hapmap]
rs9374071	0.83[CEU][hapmap]
rs9374072	0.83[CEU][hapmap]
rs9374076	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9374080	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9374081	0.86[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9384703	0.83[CEU][hapmap]
rs9386779	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9386781	0.83[CEU][hapmap]
rs9386784	0.83[CEU][hapmap]
rs9386795	0.92[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9386796	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9398191	0.83[CEU][hapmap]
rs9398192	0.83[CEU][hapmap]
rs9400265	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9400272	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.82[JPT][hapmap];0.84[LWK][hapmap];0.85[YRI][hapmap];0.94[ASN][1000 genomes]
rs9400273	0.80[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9400276	0.85[TSI][hapmap]
rs9480924	0.82[CHB][hapmap];0.82[JPT][hapmap];0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9487023	0.86[ASN][1000 genomes]
rs9487048	0.83[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.85[YRI][hapmap];0.94[ASN][1000 genomes]
rs9487049	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487051	0.94[ASN][1000 genomes]
rs9487052	0.91[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs949881	0.83[CEU][hapmap]
rs949882	0.83[CEU][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11153166	ATG5	cis	cerebellum	SCAN

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109614800-109624400	Enhancers	K562	blood
2	chr6:109615400-109624600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr6:109615600-109622600	Weak transcription	Left Ventricle	heart
4	chr6:109615600-109622600	Weak transcription	Right Ventricle	heart
5	chr6:109616200-109624400	Weak transcription	Hela-S3	cervix
6	chr6:109617800-109623200	Enhancers	Fetal Muscle Leg	muscle
7	chr6:109618200-109623400	Enhancers	Colon Smooth Muscle	Colon
8	chr6:109618800-109624800	Weak transcription	Duodenum Mucosa	Duodenum
9	chr6:109619200-109622800	Weak transcription	Ovary	ovary
10	chr6:109619200-109625800	Weak transcription	Brain Angular Gyrus	brain
11	chr6:109619200-109626800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr6:109619400-109622800	Weak transcription	Brain Anterior Caudate	brain
13	chr6:109619400-109623200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr6:109619400-109624600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr6:109619400-109625000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr6:109619400-109629200	Weak transcription	Gastric	stomach
17	chr6:109619400-109638000	Weak transcription	HepG2	liver
18	chr6:109619600-109623200	Weak transcription	Small Intestine	intestine
19	chr6:109619600-109624800	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr6:109619600-109625200	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr6:109619600-109625400	Enhancers	Stomach Smooth Muscle	stomach
22	chr6:109619600-109625600	Weak transcription	Lung	lung
23	chr6:109619600-109626000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr6:109620000-109625000	Weak transcription	Primary B cells from cord blood	blood
25	chr6:109620200-109622600	Enhancers	Fetal Intestine Small	intestine
26	chr6:109620200-109622800	Enhancers	Rectal Smooth Muscle	rectum
27	chr6:109620200-109623200	Enhancers	Psoas Muscle	Psoas
28	chr6:109620200-109623400	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr6:109620400-109622800	Weak transcription	Brain Hippocampus Middle	brain
30	chr6:109620400-109623600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
31	chr6:109620800-109623400	Enhancers	Pancreatic Islets	Pancreatic Islet
32	chr6:109621200-109623800	Enhancers	Stomach Mucosa	stomach
33	chr6:109621400-109622600	Weak transcription	Aorta	Aorta
34	chr6:109621400-109623400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr6:109621400-109629600	Enhancers	Primary hematopoietic stem cells	blood
36	chr6:109621600-109622600	Weak transcription	Adipose Nuclei	Adipose
37	chr6:109621600-109625200	Weak transcription	Spleen	Spleen
38	chr6:109621600-109625600	Weak transcription	Right Atrium	heart
39	chr6:109621600-109634000	Weak transcription	Fetal Muscle Trunk	muscle
40	chr6:109621800-109622800	Weak transcription	Fetal Lung	lung
41	chr6:109621800-109623200	Enhancers	Cortex derived primary cultured neurospheres	brain
42	chr6:109621800-109624400	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr6:109621800-109624600	Weak transcription	Primary monocytes fromperipheralblood	blood
44	chr6:109621800-109624800	Weak transcription	Primary B cells from peripheral blood	blood
45	chr6:109621800-109624800	Weak transcription	Fetal Thymus	thymus
46	chr6:109621800-109625000	Weak transcription	Monocytes-CD14+_RO01746	blood
47	chr6:109621800-109625200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr6:109622000-109623200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr6:109622000-109623400	Enhancers	Fetal Heart	heart
50	chr6:109622000-109625800	Enhancers	Primary hematopoietic stem cells short term culture	blood

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