Variant report

Variant	rs9400265
Chromosome Location	chr6:109594932-109594933
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:109593092..109595542-chr6:109664453..109666969,2	MCF-7	breast:
2	chr6:109594298..109596125-chr6:109602003..109604436,2	K562	blood:

Variant related genes	Relation type
ENSG00000203799	Chromatin interaction

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs1008084	0.92[ASN][1000 genomes]
rs11153165	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11153166	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11153167	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11153168	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11751953	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11757567	0.94[ASN][1000 genomes]
rs11961369	0.94[ASN][1000 genomes]
rs11966072	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12664455	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13191948	0.94[ASN][1000 genomes]
rs13196219	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13200047	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13203155	0.88[ASN][1000 genomes]
rs13219432	0.94[ASN][1000 genomes]
rs13219561	0.94[ASN][1000 genomes]
rs1341271	0.94[ASN][1000 genomes]
rs1546723	0.94[ASN][1000 genomes]
rs351718	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs351719	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs351721	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs351722	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs351723	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs351726	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs351735	0.83[EUR][1000 genomes]
rs351736	0.83[EUR][1000 genomes]
rs351737	0.83[EUR][1000 genomes]
rs351744	0.80[EUR][1000 genomes]
rs351746	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs351747	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs351750	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs351751	0.80[EUR][1000 genomes]
rs353052	0.83[EUR][1000 genomes]
rs377436	0.80[EUR][1000 genomes]
rs396635	0.80[EUR][1000 genomes]
rs412754	0.80[EUR][1000 genomes]
rs422113	0.81[EUR][1000 genomes]
rs446974	0.80[EUR][1000 genomes]
rs448496	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs449736	0.80[EUR][1000 genomes]
rs4548045	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs5005289	0.94[ASN][1000 genomes]
rs55677234	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs566164	0.82[EUR][1000 genomes]
rs59272337	0.98[ASN][1000 genomes]
rs59673	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6568569	0.94[ASN][1000 genomes]
rs6568570	0.94[ASN][1000 genomes]
rs6568571	0.94[ASN][1000 genomes]
rs6925339	0.88[EUR][1000 genomes]
rs7748918	0.94[ASN][1000 genomes]
rs7773490	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs830552	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs830554	0.80[EUR][1000 genomes]
rs9374076	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9374080	0.94[ASN][1000 genomes]
rs9374081	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9386779	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9386795	0.94[ASN][1000 genomes]
rs9386796	0.94[ASN][1000 genomes]
rs9400272	0.94[ASN][1000 genomes]
rs9400273	0.94[ASN][1000 genomes]
rs9480924	0.94[ASN][1000 genomes]
rs9487023	0.86[ASN][1000 genomes]
rs9487048	0.94[ASN][1000 genomes]
rs9487049	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487051	0.94[ASN][1000 genomes]
rs9487052	0.95[ASN][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109572800-109595200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:109587600-109614600	Weak transcription	HepG2	liver
3	chr6:109590800-109595600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr6:109591400-109595400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr6:109591600-109615200	Weak transcription	Placenta	Placenta

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