Variant report

Variant	rs9374072
Chromosome Location	chr6:109591586-109591587
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:109586422..109588540-chr6:109591361..109594071,2	MCF-7	breast:
2	chr6:109586366..109589239-chr6:109589741..109593458,3	K562	blood:
3	chr6:109591501..109593728-chr6:109701913..109704339,2	K562	blood:

Variant related genes	Relation type
ENSG00000260273	Chromatin interaction
ENSG00000135535	Chromatin interaction

Extended variants
information (count: 104 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:104)

rs_ID	r²[population]
rs1111863	0.82[YRI][hapmap]
rs11153165	0.81[CEU][hapmap]
rs11153166	0.83[CEU][hapmap]
rs11153167	0.83[CEU][hapmap]
rs1260595	0.87[JPT][hapmap]
rs1260596	0.85[JPT][hapmap]
rs13195816	0.94[ASN][1000 genomes]
rs13210424	0.94[ASN][1000 genomes]
rs13210693	0.93[ASN][1000 genomes]
rs1341272	0.91[JPT][hapmap]
rs1521905	0.94[ASN][1000 genomes]
rs1521908	0.81[YRI][hapmap]
rs1608041	0.94[ASN][1000 genomes]
rs1608042	0.94[ASN][1000 genomes]
rs1608044	0.94[ASN][1000 genomes]
rs1741930	0.87[JPT][hapmap]
rs1761608	0.86[JPT][hapmap]
rs1829694	0.94[ASN][1000 genomes]
rs1915834	0.90[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs1915835	0.90[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs2222392	0.92[ASN][1000 genomes]
rs2884012	0.94[ASN][1000 genomes]
rs2884013	0.93[ASN][1000 genomes]
rs34981677	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs351736	0.81[CEU][hapmap]
rs351737	0.83[CEU][hapmap]
rs35492211	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs368467	0.86[JPT][hapmap]
rs396000	0.91[JPT][hapmap]
rs419106	0.91[JPT][hapmap]
rs4383852	0.94[ASN][1000 genomes]
rs4406271	0.94[ASN][1000 genomes]
rs4427037	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs566164	0.83[CEU][hapmap]
rs6568558	0.93[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs6568559	0.94[ASN][1000 genomes]
rs6568560	0.93[ASN][1000 genomes]
rs6568561	0.83[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs6568564	0.94[ASN][1000 genomes]
rs6568566	0.94[ASN][1000 genomes]
rs6568567	0.93[ASN][1000 genomes]
rs6568568	0.94[ASN][1000 genomes]
rs6899616	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6903107	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6910119	0.93[ASN][1000 genomes]
rs6910696	0.97[ASN][1000 genomes]
rs6925339	0.83[CEU][hapmap]
rs6925716	0.94[ASN][1000 genomes]
rs6928622	0.94[ASN][1000 genomes]
rs6929438	0.93[ASN][1000 genomes]
rs6930526	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6930693	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6930698	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6930844	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6933326	0.93[ASN][1000 genomes]
rs7748641	0.97[ASN][1000 genomes]
rs7753697	0.93[ASN][1000 genomes]
rs7753705	0.93[ASN][1000 genomes]
rs7755970	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7765166	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7772602	0.86[YRI][hapmap]
rs7773213	0.93[ASN][1000 genomes]
rs7773490	0.81[CEU][hapmap]
rs7773775	0.93[ASN][1000 genomes]
rs7773815	0.90[ASN][1000 genomes]
rs7774377	0.93[ASN][1000 genomes]
rs7774390	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7775206	0.94[ASN][1000 genomes]
rs932223	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.83[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs9372205	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9372208	0.94[ASN][1000 genomes]
rs9372209	0.93[ASN][1000 genomes]
rs9372210	0.93[ASN][1000 genomes]
rs9374069	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9374070	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9374071	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9374077	0.93[ASN][1000 genomes]
rs9384703	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9384704	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9384705	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9384706	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9386780	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs9386781	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9386783	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9386784	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9386787	0.92[ASN][1000 genomes]
rs9386788	0.93[ASN][1000 genomes]
rs9386789	0.83[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs9398191	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9398192	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9398193	0.93[ASN][1000 genomes]
rs9398196	0.93[ASN][1000 genomes]
rs9400262	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9400266	0.94[ASN][1000 genomes]
rs9400267	0.93[ASN][1000 genomes]
rs9400268	0.93[ASN][1000 genomes]
rs9400271	0.81[CEU][hapmap]
rs9480922	0.83[YRI][hapmap]
rs9480923	0.87[YRI][hapmap]
rs9487020	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487033	0.82[YRI][hapmap]
rs949881	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs949882	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9784763	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109572800-109595200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:109587600-109614600	Weak transcription	HepG2	liver
3	chr6:109588800-109594200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr6:109589800-109591600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
5	chr6:109590600-109591600	Strong transcription	Placenta	Placenta
6	chr6:109590600-109592400	Weak transcription	Psoas Muscle	Psoas
7	chr6:109590800-109592400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr6:109590800-109595600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr6:109591400-109592000	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr6:109591400-109593600	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr6:109591400-109595400	Weak transcription	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links