Variant report

Variant	rs9400271
Chromosome Location	chr6:109607556-109607557
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:109598901..109600827-chr6:109607168..109608877,2	MCF-7	breast:
2	chr6:109605714..109609020-chr6:109609558..109612279,3	K562	blood:
3	chr6:109604413..109609020-chr6:109610779..109613527,4	K562	blood:
4	chr6:109604277..109607787-chr6:109628110..109631936,3	K562	blood:

Variant related genes	Relation type
ENSG00000238474	Chromatin interaction
ENSG00000203799	Chromatin interaction
ENSG00000233908	Chromatin interaction
ENSG00000219700	Chromatin interaction

Extended variants
information (count: 129 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:129)

rs_ID	r²[population]
rs1008084	0.85[CEU][hapmap]
rs1111863	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1111864	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1111865	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1111866	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1260595	0.81[CEU][hapmap]
rs1260596	0.80[CEU][hapmap]
rs13195816	0.84[EUR][1000 genomes]
rs1320612	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13209277	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13210424	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13210693	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1341271	0.88[CEU][hapmap]
rs1521905	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1521908	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1546722	0.89[ASN][1000 genomes]
rs1608041	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1608042	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1608044	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1741930	0.81[CEU][hapmap]
rs1829694	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1832777	0.86[ASN][1000 genomes]
rs1915834	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1915835	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2222392	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2356817	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2884012	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2884013	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs368467	0.81[CEU][hapmap]
rs4383852	0.83[EUR][1000 genomes]
rs4403290	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4406271	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4427037	0.82[CEU][hapmap]
rs4601178	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5012479	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6568558	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6568559	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6568560	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6568561	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6568564	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6568566	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6568567	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6568568	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6902892	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6903107	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6903695	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6910119	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6910696	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6913093	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6924776	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6924815	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6925716	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6927569	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6928622	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6929438	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6930733	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6932503	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6933326	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7744284	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7748641	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7748918	0.88[CEU][hapmap]
rs7753697	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7753705	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7755970	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7757347	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7772602	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7773213	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7773331	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7773775	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7773815	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7774377	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7774390	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7775206	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs882072	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs882074	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9320282	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs932223	0.96[CEU][hapmap];0.88[YRI][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9372208	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9372209	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9372210	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9372211	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9374069	0.81[CEU][hapmap];0.81[CHB][hapmap]
rs9374070	0.80[CEU][hapmap]
rs9374071	0.82[CEU][hapmap]
rs9374072	0.81[CEU][hapmap]
rs9374077	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9374079	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9374080	0.88[CEU][hapmap]
rs9386780	0.82[EUR][1000 genomes]
rs9386781	0.85[CEU][hapmap]
rs9386787	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9386788	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9386789	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9386790	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9386791	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9386792	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9386793	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9386794	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9386796	0.88[CEU][hapmap]
rs9386797	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9398191	0.80[CEU][hapmap]
rs9398192	0.82[CEU][hapmap]
rs9398193	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9398196	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9398197	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9400266	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9400267	0.83[EUR][1000 genomes]
rs9400268	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9400269	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9400270	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9400272	0.88[CEU][hapmap]
rs9400273	0.85[CEU][hapmap]
rs9480921	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9480922	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9480923	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487032	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9487033	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487034	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487036	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.80[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487038	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487039	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487042	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487043	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9487048	0.85[CEU][hapmap]
rs9487053	1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9487058	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs949881	0.80[CEU][hapmap]
rs949882	0.80[CEU][hapmap]
rs9784763	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.96[ASN][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109587600-109614600	Weak transcription	HepG2	liver
2	chr6:109591600-109615200	Weak transcription	Placenta	Placenta
3	chr6:109606200-109614400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr6:109606800-109608800	Enhancers	Fetal Intestine Large	intestine
5	chr6:109607000-109608200	Enhancers	Brain Substantia Nigra	brain
6	chr6:109607000-109609000	Weak transcription	K562	blood
7	chr6:109607200-109607600	Enhancers	Fetal Kidney	kidney

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