Variant report

Variant	rs1546722
Chromosome Location	chr6:109625797-109625798
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:119)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:119 , 50 per page) page: 1 2 3

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EGR1	chr6:109625503-109626019	K562	blood:	n/a	n/a
2	NR2F2	chr6:109625062-109626138	K562	blood:	n/a	n/a
3	MYC	chr6:109624828-109626301	K562	blood:	n/a	n/a
4	HMGN3	chr6:109625169-109626147	K562	blood:	n/a	n/a
5	SPI1	chr6:109625326-109626234	GM12878	blood:	n/a	n/a
6	BATF	chr6:109625525-109625958	GM12878	blood:	n/a	n/a
7	RUNX3	chr6:109625501-109626052	GM12878	blood:	n/a	n/a
8	SIN3AK20	chr6:109624913-109625817	MCF-7	breast:	n/a	n/a
9	MAFF	chr6:109625204-109626105	K562	blood:	n/a	n/a
10	EP300	chr6:109624869-109626613	K562	blood:	n/a	chr6:109624963-109624973
11	MEF2A	chr6:109625582-109626007	K562	blood:	n/a	n/a
12	STAT2	chr6:109625311-109626090	K562	blood:	n/a	chr6:109625783-109625798
13	STAT5A	chr6:109625381-109626313	K562	blood:	n/a	n/a
14	CREB1	chr6:109625283-109626208	K562	blood:	n/a	n/a
15	CTCF	chr6:109625501-109626140	K562	blood:	n/a	n/a
16	NFIC	chr6:109625472-109625968	GM12878	blood:	n/a	n/a
17	ELF1	chr6:109625423-109626221	K562	blood:	n/a	n/a
18	SPI1	chr6:109625582-109625943	GM12878	blood:	n/a	n/a
19	MYC	chr6:109624868-109626229	K562	blood:	n/a	n/a
20	PML	chr6:109625114-109626211	K562	blood:	n/a	n/a
21	JUND	chr6:109624960-109626258	K562	blood:	n/a	n/a
22	BACH1	chr6:109625548-109626037	K562	blood:	n/a	n/a
23	GATA2	chr6:109625161-109626144	K562	blood:	n/a	chr6:109625249-109625265 chr6:109625251-109625258
24	RAD21	chr6:109625583-109626069	K562	blood:	n/a	n/a
25	CEBPD	chr6:109625422-109626203	K562	blood:	n/a	n/a
26	SPI1	chr6:109625538-109626031	GM12891	blood:	n/a	n/a
27	GATA3	chr6:109624872-109625799	MCF-7	breast:	n/a	chr6:109625249-109625265 chr6:109625251-109625258
28	TRIM28	chr6:109625266-109626078	K562	blood:	n/a	n/a
29	MYC	chr6:109624986-109626259	K562	blood:	n/a	n/a
30	TRIM28	chr6:109624749-109626180	K562	blood:	n/a	n/a
31	TAF1	chr6:109625572-109625959	K562	blood:	n/a	n/a
32	NR3C1	chr6:109625534-109625813	A549	lung:	n/a	n/a
33	MAFK	chr6:109625233-109626082	K562	blood:	n/a	n/a
34	CHD2	chr6:109625065-109626025	K562	blood:	n/a	n/a
35	RCOR1	chr6:109624924-109626269	K562	blood:	n/a	n/a
36	GABPA	chr6:109625422-109626073	K562	blood:	n/a	n/a
37	USF1	chr6:109625457-109626147	K562	blood:	n/a	n/a
38	JUN	chr6:109625148-109626221	K562	blood:	n/a	n/a
39	TAL1	chr6:109625149-109626289	K562	blood:	n/a	n/a
40	BATF	chr6:109625581-109625829	GM12878	blood:	n/a	n/a
41	BHLHE40	chr6:109625057-109626198	K562	blood:	n/a	n/a
42	ZNF274	chr6:109625202-109626061	K562	blood:	n/a	n/a
43	EP300	chr6:109625286-109626247	K562	blood:	n/a	n/a
44	GATA2	chr6:109625142-109626131	K562	blood:	n/a	chr6:109625249-109625265 chr6:109625251-109625258
45	REST	chr6:109625439-109626160	K562	blood:	n/a	n/a
46	USF1	chr6:109625349-109626186	K562	blood:	n/a	n/a
47	MEF2A	chr6:109625246-109626110	K562	blood:	n/a	n/a
48	CCNT2	chr6:109624959-109626164	K562	blood:	n/a	n/a
49	POLR2A	chr6:109625029-109626263	K562	blood:	n/a	n/a
50	HCFC1	chr6:109624970-109626203	K562	blood:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:109623091..109628183-chr6:109700606..109706462,9	K562	blood:
2	chr6:109625731..109626429-chr6:109704175..109704833,2	K562	blood:
3	chr6:109555640..109560553-chr6:109624000..109628580,4	K562	blood:
4	chr6:109625539..109627045-chr6:109630480..109632036,2	K562	blood:
5	chr6:109624816..109627658-chr6:109659263..109661556,2	K562	blood:
6	chr6:109624351..109631970-chr6:109702157..109706422,11	K562	blood:

No data

Variant related genes	Relation type
ENSG00000201023	TF binding region
CCDC162P	TF binding region
ENSG00000243587	Chromatin interaction
ENSG00000203799	Chromatin interaction
ENSG00000260273	Chromatin interaction
ENSG00000135535	Chromatin interaction

Extended variants
information (count: 99 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:98)

rs_ID	r²[population]
rs1111863	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1111864	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1111865	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1111866	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs13195816	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1320612	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs13209277	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13210424	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13210693	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1521905	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1521908	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1608041	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1608042	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1608044	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1829694	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1832777	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2222392	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2356817	0.85[ASN][1000 genomes]
rs2884012	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2884013	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4383852	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4403290	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4406271	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4601178	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs5012479	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6568559	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6568560	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6568564	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6568566	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6568567	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6568568	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6902892	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6903107	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6903695	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6910119	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6913093	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6924776	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6924815	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6925716	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6927569	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6928622	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6929438	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6930733	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6932503	0.89[ASN][1000 genomes]
rs6933326	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7744284	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7753697	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7753705	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7755970	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7757347	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7772602	0.89[ASN][1000 genomes]
rs7773213	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7773331	0.88[ASN][1000 genomes]
rs7773775	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7773815	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7774377	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7774390	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7775206	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs882072	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs882074	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9320282	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9372208	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9372209	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9372210	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9372211	0.89[ASN][1000 genomes]
rs9374077	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9374079	0.89[ASN][1000 genomes]
rs9386780	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9386787	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9386788	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9386790	0.89[ASN][1000 genomes]
rs9386791	0.89[ASN][1000 genomes]
rs9386792	0.89[ASN][1000 genomes]
rs9386793	0.89[ASN][1000 genomes]
rs9386794	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9386797	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9398193	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9398196	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9398197	0.89[ASN][1000 genomes]
rs9400266	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9400267	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9400268	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9400269	0.89[ASN][1000 genomes]
rs9400270	0.89[ASN][1000 genomes]
rs9400271	0.89[ASN][1000 genomes]
rs9480922	0.89[ASN][1000 genomes]
rs9480923	0.89[ASN][1000 genomes]
rs9487032	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9487033	0.89[ASN][1000 genomes]
rs9487034	0.89[ASN][1000 genomes]
rs9487036	0.89[ASN][1000 genomes]
rs9487038	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9487039	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9487042	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9487043	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9487053	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9487058	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9784763	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527719	chr6:109624937-109631609	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109619200-109625800	Weak transcription	Brain Angular Gyrus	brain
2	chr6:109619200-109626800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr6:109619400-109629200	Weak transcription	Gastric	stomach
4	chr6:109619400-109638000	Weak transcription	HepG2	liver
5	chr6:109619600-109626000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:109621400-109629600	Enhancers	Primary hematopoietic stem cells	blood
7	chr6:109621600-109634000	Weak transcription	Fetal Muscle Trunk	muscle
8	chr6:109622000-109625800	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr6:109622400-109626200	Enhancers	Placenta	Placenta
10	chr6:109623200-109625800	Weak transcription	Brain Hippocampus Middle	brain
11	chr6:109623600-109629400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr6:109624000-109627000	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr6:109624400-109626000	Enhancers	Hela-S3	cervix
14	chr6:109624400-109626400	Flanking Active TSS	K562	blood
15	chr6:109624400-109626600	Enhancers	Rectal Mucosa Donor 31	rectum
16	chr6:109624600-109626200	Enhancers	Sigmoid Colon	Sigmoid Colon
17	chr6:109624600-109626400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr6:109624600-109626400	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr6:109624600-109626400	Enhancers	Pancreas	Pancrea
20	chr6:109624600-109626600	Enhancers	Fetal Intestine Large	intestine
21	chr6:109624600-109631000	Enhancers	Fetal Intestine Small	intestine
22	chr6:109624800-109625800	Enhancers	Fetal Muscle Leg	muscle
23	chr6:109624800-109626000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr6:109624800-109626200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
25	chr6:109624800-109626400	Enhancers	Stomach Mucosa	stomach
26	chr6:109624800-109627400	Enhancers	Primary B cells from peripheral blood	blood
27	chr6:109624800-109628200	Enhancers	Fetal Thymus	thymus
28	chr6:109624800-109629000	Enhancers	Duodenum Mucosa	Duodenum
29	chr6:109625000-109625800	Enhancers	Small Intestine	intestine
30	chr6:109625000-109625800	Enhancers	NHDF-Ad	bronchial
31	chr6:109625000-109626200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr6:109625000-109626200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr6:109625000-109626200	Enhancers	Left Ventricle	heart
34	chr6:109625000-109626200	Enhancers	Right Ventricle	heart
35	chr6:109625000-109626400	Enhancers	Monocytes-CD14+_RO01746	blood
36	chr6:109625000-109627000	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr6:109625000-109627000	Enhancers	Brain Substantia Nigra	brain
38	chr6:109625000-109627000	Enhancers	Skeletal Muscle Female	skeletal muscle
39	chr6:109625000-109627400	Enhancers	Primary B cells from cord blood	blood
40	chr6:109625200-109625800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr6:109625200-109625800	Flanking Active TSS	GM12878-XiMat	blood
42	chr6:109625200-109625800	Enhancers	HSMM	muscle
43	chr6:109625200-109626000	Enhancers	HUES6 Cell Line	embryonic stem cell
44	chr6:109625200-109626000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
45	chr6:109625200-109626200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr6:109625200-109626200	Enhancers	Fetal Heart	heart
47	chr6:109625200-109626200	Enhancers	Thymus	Thymus
48	chr6:109625200-109626200	Enhancers	Spleen	Spleen
49	chr6:109625200-109626400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr6:109625200-109628200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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