Variant report

Variant	rs6929438
Chromosome Location	chr6:109595506-109595507
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:109593092..109595542-chr6:109664453..109666969,2	MCF-7	breast:
2	chr6:109594298..109596125-chr6:109602003..109604436,2	K562	blood:

Variant related genes	Relation type
ENSG00000203799	Chromatin interaction

Extended variants
information (count: 130 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:130)

rs_ID	r²[population]
rs1111863	0.83[EUR][1000 genomes]
rs1111864	0.83[EUR][1000 genomes]
rs1111865	0.83[EUR][1000 genomes]
rs1111866	0.83[EUR][1000 genomes]
rs13195816	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1320612	0.83[EUR][1000 genomes]
rs13209277	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13210424	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13210693	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1521905	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1521908	0.83[EUR][1000 genomes]
rs1546722	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1608041	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1608042	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1608044	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1829694	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1832777	0.87[EUR][1000 genomes]
rs1915834	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1915835	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2222392	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2356817	0.82[EUR][1000 genomes]
rs2884012	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2884013	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34981677	0.95[ASN][1000 genomes]
rs35492211	0.89[ASN][1000 genomes]
rs4383852	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4403290	0.83[EUR][1000 genomes]
rs4406271	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4427037	0.91[ASN][1000 genomes]
rs4601178	0.83[EUR][1000 genomes]
rs5012479	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6568558	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6568559	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6568560	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6568561	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6568564	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6568566	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6568567	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6568568	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6899616	0.88[ASN][1000 genomes]
rs6902892	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6903107	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6903695	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6910119	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6910696	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6913093	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6924776	0.83[EUR][1000 genomes]
rs6924815	0.83[EUR][1000 genomes]
rs6925716	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6927569	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6928622	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6930526	0.93[ASN][1000 genomes]
rs6930693	0.91[ASN][1000 genomes]
rs6930698	0.95[ASN][1000 genomes]
rs6930733	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6930844	0.93[ASN][1000 genomes]
rs6932503	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6933326	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7744284	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7748641	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7753697	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7753705	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7755970	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7757347	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7772602	0.83[EUR][1000 genomes]
rs7773213	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7773331	0.83[EUR][1000 genomes]
rs7773775	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7773815	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7774377	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7774390	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7775206	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs882072	0.83[EUR][1000 genomes]
rs882074	0.83[EUR][1000 genomes]
rs9320282	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs932223	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9372205	0.93[ASN][1000 genomes]
rs9372208	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9372209	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9372210	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9372211	0.83[EUR][1000 genomes]
rs9374069	0.91[ASN][1000 genomes]
rs9374070	0.91[ASN][1000 genomes]
rs9374071	0.92[ASN][1000 genomes]
rs9374072	0.93[ASN][1000 genomes]
rs9374077	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9374079	0.83[EUR][1000 genomes]
rs9384703	0.91[ASN][1000 genomes]
rs9384704	0.93[ASN][1000 genomes]
rs9384705	0.95[ASN][1000 genomes]
rs9384706	0.91[ASN][1000 genomes]
rs9386780	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9386781	0.88[ASN][1000 genomes]
rs9386783	0.89[ASN][1000 genomes]
rs9386784	0.93[ASN][1000 genomes]
rs9386787	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9386788	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9386789	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9386790	0.83[EUR][1000 genomes]
rs9386791	0.83[EUR][1000 genomes]
rs9386792	0.83[EUR][1000 genomes]
rs9386793	0.83[EUR][1000 genomes]
rs9386794	0.83[EUR][1000 genomes]
rs9386797	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9398191	0.91[ASN][1000 genomes]
rs9398192	0.93[ASN][1000 genomes]
rs9398193	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9398196	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9398197	0.83[EUR][1000 genomes]
rs9400262	0.93[ASN][1000 genomes]
rs9400266	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9400267	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9400268	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9400269	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9400270	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9400271	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9480922	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9480923	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9487020	0.93[ASN][1000 genomes]
rs9487033	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9487034	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9487036	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9487038	0.83[EUR][1000 genomes]
rs9487039	0.83[EUR][1000 genomes]
rs9487042	0.83[EUR][1000 genomes]
rs9487043	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9487053	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9487058	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs949881	0.91[ASN][1000 genomes]
rs949882	0.91[ASN][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109587600-109614600	Weak transcription	HepG2	liver
2	chr6:109590800-109595600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr6:109591600-109615200	Weak transcription	Placenta	Placenta
4	chr6:109595200-109595800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:109595400-109595800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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