Variant report

Variant	rs9487058
Chromosome Location	chr6:109631060-109631061
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:109630848..109632942-chr6:109701333..109705023,3	MCF-7	breast:
2	chr6:109628891..109631970-chr6:109702157..109703919,3	K562	blood:
3	chr6:109625539..109627045-chr6:109630480..109632036,2	K562	blood:
4	chr6:109624351..109631970-chr6:109702157..109706422,11	K562	blood:
5	chr6:109508798..109509659-chr6:109630971..109631761,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000201023	Chromatin interaction
ENSG00000135535	Chromatin interaction
ENSG00000260273	Chromatin interaction

Extended variants
information (count: 107 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:106)

rs_ID	r²[population]
rs1111863	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1111864	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1111865	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1111866	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13195816	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1320612	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13209277	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13210424	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13210693	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1521905	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1521908	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1546722	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1608041	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1608042	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1608044	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1829694	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1832777	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1915834	0.83[EUR][1000 genomes]
rs1915835	0.83[EUR][1000 genomes]
rs2222392	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2356817	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2884012	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2884013	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4383852	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4403290	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4406271	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4601178	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs5012479	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6568558	0.83[EUR][1000 genomes]
rs6568559	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6568560	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6568561	0.83[EUR][1000 genomes]
rs6568564	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6568566	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6568567	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6568568	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6902892	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6903107	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6903695	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6910119	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6910696	0.83[EUR][1000 genomes]
rs6913093	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6924776	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6924815	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6925716	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6927569	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6928622	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6929438	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6930733	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6932503	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6933326	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7744284	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7748641	0.82[EUR][1000 genomes]
rs7753697	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7753705	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7755970	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7757347	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7772602	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7773213	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7773331	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7773775	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7773815	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7774377	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7774390	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7775206	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs882072	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs882074	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9320282	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs932223	0.84[EUR][1000 genomes]
rs9372208	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9372209	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9372210	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9372211	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9374077	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9374079	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9386780	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9386787	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9386788	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9386789	0.84[EUR][1000 genomes]
rs9386790	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9386791	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9386792	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9386793	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9386794	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9386797	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9398193	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9398196	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9398197	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9400266	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9400267	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9400268	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9400269	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9400270	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9400271	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9480922	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9480923	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9487032	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9487033	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9487034	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9487036	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9487038	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9487039	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9487042	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9487043	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9487053	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9784763	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527719	chr6:109624937-109631609	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109619400-109638000	Weak transcription	HepG2	liver
2	chr6:109621600-109634000	Weak transcription	Fetal Muscle Trunk	muscle
3	chr6:109625800-109634200	Weak transcription	Fetal Muscle Leg	muscle
4	chr6:109626200-109631800	Weak transcription	Placenta	Placenta
5	chr6:109626200-109634200	Weak transcription	Psoas Muscle	Psoas
6	chr6:109626200-109638800	Weak transcription	Thymus	Thymus
7	chr6:109627600-109639000	Weak transcription	Left Ventricle	heart
8	chr6:109629600-109634000	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr6:109629600-109639800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:109629600-109654000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr6:109630000-109631200	Weak transcription	K562	blood
12	chr6:109630000-109632400	Weak transcription	NHDF-Ad	bronchial
13	chr6:109630200-109634400	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr6:109630600-109632000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr6:109630600-109632600	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr6:109630800-109631600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr6:109630800-109636200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr6:109630800-109636200	Weak transcription	Fetal Intestine Large	intestine
19	chr6:109631000-109631200	Enhancers	Stomach Mucosa	stomach
20	chr6:109631000-109636200	Weak transcription	Fetal Intestine Small	intestine

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