Variant report

Variant	rs1521908
Chromosome Location	chr6:109613986-109613987
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr6:109613733-109614018	K562	blood:	n/a	chr6:109613896-109613906
2	CBX3	chr6:109613586-109614075	K562	blood:	n/a	n/a
3	MYC	chr6:109613715-109614037	K562	blood:	n/a	chr6:109613896-109613906
4	CBX3	chr6:109613682-109614002	K562	blood:	n/a	n/a
5	MAX	chr6:109613815-109614017	NB4	blood:	n/a	chr6:109613896-109613906
6	MAX	chr6:109613613-109614131	K562	blood:	n/a	chr6:109613896-109613906
7	MAX	chr6:109613785-109614059	H1-hESC	embryonic stem cell:	n/a	chr6:109613896-109613906

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:109613644..109615634-chr6:109701677..109704002,2	K562	blood:
2	chr6:109613797..109616312-chr6:109702118..109704634,2	MCF-7	breast:

Variant related genes	Relation type
CCDC162P	TF binding region
ENSG00000238474	TF binding region
PTCHD3P3	TF binding region
ENSG00000135535	Chromatin interaction
ENSG00000260273	Chromatin interaction

Extended variants
information (count: 129 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:129)

rs_ID	r²[population]
rs1008084	0.86[CEU][hapmap]
rs1111863	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1111864	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1111865	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1111866	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1260595	0.82[CEU][hapmap]
rs1260596	0.81[CEU][hapmap]
rs13195816	0.84[EUR][1000 genomes]
rs1320612	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13209277	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13210424	0.83[EUR][1000 genomes]
rs13210693	0.83[EUR][1000 genomes]
rs1341271	0.88[CEU][hapmap]
rs1341272	0.80[CEU][hapmap]
rs1521905	0.83[EUR][1000 genomes]
rs1546722	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1608041	0.83[EUR][1000 genomes]
rs1608042	0.83[EUR][1000 genomes]
rs1608044	0.83[EUR][1000 genomes]
rs1741930	0.82[CEU][hapmap]
rs1761608	0.80[CEU][hapmap]
rs1829694	0.83[EUR][1000 genomes]
rs1832777	0.86[ASN][1000 genomes]
rs1915834	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1915835	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2222392	0.84[EUR][1000 genomes]
rs2356817	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2884012	0.83[EUR][1000 genomes]
rs2884013	0.83[EUR][1000 genomes]
rs368467	0.82[CEU][hapmap]
rs396000	0.81[CEU][hapmap]
rs419106	0.81[CEU][hapmap]
rs4383852	0.83[EUR][1000 genomes]
rs4403290	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4406271	0.83[EUR][1000 genomes]
rs4601178	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5012479	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6568558	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6568559	0.83[EUR][1000 genomes]
rs6568560	0.83[EUR][1000 genomes]
rs6568561	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6568564	0.83[EUR][1000 genomes]
rs6568566	0.83[EUR][1000 genomes]
rs6568567	0.83[EUR][1000 genomes]
rs6568568	0.83[EUR][1000 genomes]
rs6902892	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6903107	0.83[EUR][1000 genomes]
rs6903695	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6910119	0.83[EUR][1000 genomes]
rs6910696	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6913093	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6924776	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6924815	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6925716	0.83[EUR][1000 genomes]
rs6927569	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6928622	0.83[EUR][1000 genomes]
rs6929438	0.83[EUR][1000 genomes]
rs6930733	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6932503	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6933326	0.83[EUR][1000 genomes]
rs7744284	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7748641	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7748918	0.88[CEU][hapmap]
rs7753697	0.83[EUR][1000 genomes]
rs7753705	0.83[EUR][1000 genomes]
rs7755970	0.80[EUR][1000 genomes]
rs7757347	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7772602	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7773213	0.83[EUR][1000 genomes]
rs7773331	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7773775	0.83[EUR][1000 genomes]
rs7773815	0.80[EUR][1000 genomes]
rs7774377	0.84[EUR][1000 genomes]
rs7774390	0.84[EUR][1000 genomes]
rs7775206	0.83[EUR][1000 genomes]
rs882072	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs882074	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9320282	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs932223	0.96[CEU][hapmap];0.92[YRI][hapmap];0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9372208	0.83[EUR][1000 genomes]
rs9372209	0.83[EUR][1000 genomes]
rs9372210	0.83[EUR][1000 genomes]
rs9372211	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9374069	0.83[YRI][hapmap]
rs9374071	0.81[YRI][hapmap]
rs9374072	0.81[YRI][hapmap]
rs9374077	0.83[EUR][1000 genomes]
rs9374079	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9374080	0.88[CEU][hapmap]
rs9384704	0.82[YRI][hapmap]
rs9386780	0.82[EUR][1000 genomes]
rs9386781	0.82[CEU][hapmap]
rs9386787	0.84[EUR][1000 genomes]
rs9386788	0.83[EUR][1000 genomes]
rs9386789	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9386790	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9386791	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9386792	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9386793	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9386794	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9386796	0.88[CEU][hapmap]
rs9386797	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9398192	0.81[YRI][hapmap]
rs9398193	0.83[EUR][1000 genomes]
rs9398196	0.83[EUR][1000 genomes]
rs9398197	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9400266	0.83[EUR][1000 genomes]
rs9400267	0.83[EUR][1000 genomes]
rs9400268	0.83[EUR][1000 genomes]
rs9400269	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9400270	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9400271	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9400272	0.88[CEU][hapmap]
rs9400273	0.85[CEU][hapmap]
rs9480921	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs9480922	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9480923	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487032	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9487033	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487034	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487036	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.88[YRI][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487038	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487039	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487042	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487043	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9487048	0.85[CEU][hapmap]
rs9487053	1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9487058	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9784763	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109587600-109614600	Weak transcription	HepG2	liver
2	chr6:109591600-109615200	Weak transcription	Placenta	Placenta
3	chr6:109606200-109614400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr6:109611200-109615200	Weak transcription	Esophagus	oesophagus
5	chr6:109611200-109618200	Weak transcription	Gastric	stomach
6	chr6:109612600-109615400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:109612600-109615600	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr6:109612800-109614000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr6:109612800-109614200	Enhancers	Stomach Mucosa	stomach
10	chr6:109612800-109614800	Enhancers	Hela-S3	cervix
11	chr6:109612800-109615200	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr6:109613000-109614200	Enhancers	Brain Hippocampus Middle	brain
13	chr6:109613000-109615600	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr6:109613000-109619000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr6:109613200-109614000	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr6:109613200-109614000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr6:109613200-109614000	Enhancers	Brain Angular Gyrus	brain
18	chr6:109613200-109614000	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr6:109613200-109614000	Enhancers	Brain Substantia Nigra	brain
20	chr6:109613200-109614000	Enhancers	Duodenum Mucosa	Duodenum
21	chr6:109613200-109614000	Enhancers	Pancreas	Pancrea
22	chr6:109613200-109614000	Enhancers	Psoas Muscle	Psoas
23	chr6:109613200-109614200	Enhancers	Brain Cingulate Gyrus	brain
24	chr6:109613200-109614400	Enhancers	K562	blood
25	chr6:109613200-109615600	Enhancers	Left Ventricle	heart
26	chr6:109613200-109619000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr6:109613400-109614200	Enhancers	Fetal Intestine Small	intestine
28	chr6:109613400-109614600	Weak transcription	Fetal Heart	heart
29	chr6:109613400-109620200	Weak transcription	Right Atrium	heart
30	chr6:109613600-109614000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
31	chr6:109613600-109614000	Enhancers	Fetal Muscle Trunk	muscle
32	chr6:109613600-109615200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr6:109613600-109615800	Enhancers	Rectal Mucosa Donor 29	rectum
34	chr6:109613600-109617800	Weak transcription	Fetal Muscle Leg	muscle
35	chr6:109613600-109620600	Enhancers	Primary hematopoietic stem cells short term culture	blood
36	chr6:109613800-109614000	Enhancers	HUES48 Cell Line	embryonic stem cell
37	chr6:109613800-109614000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr6:109613800-109614000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr6:109613800-109614000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr6:109613800-109614400	Enhancers	ES-I3 Cell Line	embryonic stem cell
41	chr6:109613800-109614800	Weak transcription	Right Ventricle	heart
42	chr6:109613800-109615200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr6:109613800-109617400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr6:109613800-109618200	Weak transcription	Brain Anterior Caudate	brain

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