Variant report

Variant	rs9480921
Chromosome Location	chr6:109605668-109605669
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:109604174..109607113-chr6:109618128..109619634,2	MCF-7	breast:
2	chr6:109604152..109606208-chr6:109703363..109705776,2	K562	blood:
3	chr6:109604925..109606783-chr6:109700992..109703357,2	K562	blood:
4	chr6:109596645..109598762-chr6:109604228..109605955,2	K562	blood:
5	chr6:109604413..109609020-chr6:109610779..109613527,4	K562	blood:
6	chr6:109604277..109607787-chr6:109628110..109631936,3	K562	blood:

Variant related genes	Relation type
ENSG00000260273	Chromatin interaction
ENSG00000135535	Chromatin interaction
ENSG00000238474	Chromatin interaction
ENSG00000203799	Chromatin interaction
ENSG00000219700	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs1008084	0.88[CEU][hapmap]
rs1111863	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.92[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap]
rs1111865	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs1111866	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs1260595	0.80[CEU][hapmap]
rs13209277	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1341271	0.88[CEU][hapmap]
rs1341272	0.80[CEU][hapmap]
rs1521908	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs1741930	0.81[CEU][hapmap]
rs1761608	0.80[CEU][hapmap]
rs368467	0.81[CEU][hapmap]
rs396000	0.81[CEU][hapmap]
rs419106	0.81[CEU][hapmap]
rs4601178	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs6568571	0.84[CEU][hapmap]
rs6902892	1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.83[TSI][hapmap]
rs6903695	1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.83[TSI][hapmap]
rs6924815	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6927569	1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.81[TSI][hapmap]
rs7748918	0.88[CEU][hapmap]
rs7755970	0.80[MEX][hapmap]
rs7772602	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap]
rs7774390	0.80[MEX][hapmap]
rs9320282	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs932223	0.94[ASW][hapmap];0.96[CEU][hapmap];0.97[GIH][hapmap];0.91[LWK][hapmap];0.91[MEX][hapmap];0.93[MKK][hapmap];0.98[TSI][hapmap];0.89[YRI][hapmap]
rs9374070	0.82[LWK][hapmap]
rs9374080	0.88[CEU][hapmap]
rs9384703	0.82[LWK][hapmap]
rs9384704	0.82[LWK][hapmap]
rs9386781	0.81[CEU][hapmap]
rs9386784	0.82[LWK][hapmap]
rs9386790	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs9386791	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs9386796	0.88[CEU][hapmap]
rs9386797	1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.83[TSI][hapmap]
rs9398191	0.82[LWK][hapmap]
rs9400269	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs9400271	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9400272	0.88[CEU][hapmap]
rs9400273	0.88[CEU][hapmap]
rs9480922	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs9480923	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs9487033	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap]
rs9487034	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs9487036	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs9487048	0.88[CEU][hapmap]
rs9487053	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs949881	0.82[LWK][hapmap]
rs949882	0.82[LWK][hapmap]
rs9784763	1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs9480921	KHDRBS1	trans	cerebellum	SCAN
rs9480921	CD164	cis	parietal	SCAN
rs9480921	ATG5	cis	cerebellum	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109587600-109614600	Weak transcription	HepG2	liver
2	chr6:109591600-109615200	Weak transcription	Placenta	Placenta
3	chr6:109603400-109606200	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr6:109605200-109607000	Enhancers	K562	blood
5	chr6:109605400-109606000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr6:109605400-109606200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr6:109605600-109605800	Enhancers	Fetal Kidney	kidney

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