Variant report

Variant	rs9487053
Chromosome Location	chr6:109619697-109619698
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:109618748..109622933-chr6:109702458..109706144,5	K562	blood:
2	chr6:109619154..109621765-chr6:109622186..109624973,2	MCF-7	breast:
3	chr6:109618654..109620547-chr6:109621198..109623394,2	K562	blood:
4	chr6:109556981..109561984-chr6:109619235..109623303,5	K562	blood:
5	chr6:109618104..109620663-chr6:109710406..109712166,2	MCF-7	breast:
6	chr6:109617393..109622773-chr6:109623823..109627648,7	K562	blood:
7	chr6:109505984..109508437-chr6:109617883..109620389,2	MCF-7	breast:
8	chr6:109562851..109564633-chr6:109619048..109621564,2	K562	blood:
9	chr6:109617102..109620529-chr6:109701283..109704576,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000243587	Chromatin interaction
ENSG00000201023	Chromatin interaction
ENSG00000135535	Chromatin interaction
ENSG00000260273	Chromatin interaction

Extended variants
information (count: 118 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:118)

rs_ID	r²[population]
rs1006081	1.00[YRI][hapmap]
rs1111863	1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1111864	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1111865	0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1111866	1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12660449	1.00[YRI][hapmap]
rs13195816	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1320612	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13209277	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13210424	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13210693	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1521905	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1521908	1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1546722	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1608041	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1608042	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1608044	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1829694	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1832777	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1915834	0.83[EUR][1000 genomes]
rs1915835	0.83[EUR][1000 genomes]
rs2222392	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2356817	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2884012	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2884013	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3941888	0.81[AFR][1000 genomes]
rs4383852	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4403290	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4406271	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4601178	1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4945826	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs4946953	1.00[YRI][hapmap]
rs4946956	1.00[YRI][hapmap]
rs4946957	1.00[YRI][hapmap]
rs5012479	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6568558	0.83[EUR][1000 genomes]
rs6568559	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6568560	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6568561	0.83[EUR][1000 genomes]
rs6568564	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6568566	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6568567	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6568568	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6902892	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6903107	0.96[CEU][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6903519	1.00[YRI][hapmap]
rs6903695	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6910119	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6910696	0.83[EUR][1000 genomes]
rs6913093	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6924776	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6924815	1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6925716	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6927569	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6928622	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6929438	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6930733	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6932503	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6933326	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7744284	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7748641	0.82[EUR][1000 genomes]
rs7753697	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7753705	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7755970	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7757193	1.00[YRI][hapmap]
rs7757347	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7772602	1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7773213	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7773331	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7773775	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7773815	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7774377	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7774390	1.00[CEU][hapmap];0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7775206	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs882072	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs882074	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs884366	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs9320282	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs932223	0.83[EUR][1000 genomes]
rs9372208	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9372209	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9372210	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9372211	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9374069	0.83[CHB][hapmap]
rs9374077	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9374079	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9386780	0.96[CEU][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9386787	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9386788	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9386789	0.84[EUR][1000 genomes]
rs9386790	1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9386791	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9386792	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9386793	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9386794	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9386797	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9398193	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9398196	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9398197	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9400266	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9400267	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9400268	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9400269	1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9400270	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9400271	1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9480921	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs9480922	1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9480923	1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9487032	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9487033	1.00[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9487034	1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9487036	1.00[CHB][hapmap];0.89[JPT][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9487038	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9487039	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9487042	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9487043	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9487058	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9784763	0.81[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109613400-109620200	Weak transcription	Right Atrium	heart
2	chr6:109613600-109620600	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr6:109614000-109622000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr6:109614400-109621000	Enhancers	Primary hematopoietic stem cells	blood
5	chr6:109614800-109624400	Enhancers	K562	blood
6	chr6:109615200-109619800	Enhancers	Fetal Intestine Small	intestine
7	chr6:109615400-109624600	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr6:109615600-109622200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr6:109615600-109622600	Weak transcription	Left Ventricle	heart
10	chr6:109615600-109622600	Weak transcription	Right Ventricle	heart
11	chr6:109615800-109620200	Weak transcription	Psoas Muscle	Psoas
12	chr6:109616200-109624400	Weak transcription	Hela-S3	cervix
13	chr6:109617400-109620400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr6:109617800-109621800	Enhancers	Fetal Lung	lung
15	chr6:109617800-109623200	Enhancers	Fetal Muscle Leg	muscle
16	chr6:109618200-109619800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
17	chr6:109618200-109621000	Enhancers	Fetal Muscle Trunk	muscle
18	chr6:109618200-109623400	Enhancers	Colon Smooth Muscle	Colon
19	chr6:109618400-109620000	Enhancers	Adipose Nuclei	Adipose
20	chr6:109618600-109620200	Weak transcription	Placenta	Placenta
21	chr6:109618600-109620200	Weak transcription	Fetal Stomach	stomach
22	chr6:109618600-109620200	Weak transcription	Rectal Smooth Muscle	rectum
23	chr6:109618600-109621800	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr6:109618800-109624800	Weak transcription	Duodenum Mucosa	Duodenum
25	chr6:109619000-109620000	Enhancers	iPS-18 Cell Line	embryonic stem cell
26	chr6:109619200-109619800	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr6:109619200-109619800	Enhancers	iPS-15b Cell Line	embryonic stem cell
28	chr6:109619200-109619800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
29	chr6:109619200-109620400	Enhancers	Primary neutrophils fromperipheralblood	blood
30	chr6:109619200-109622800	Weak transcription	Ovary	ovary
31	chr6:109619200-109625800	Weak transcription	Brain Angular Gyrus	brain
32	chr6:109619200-109626800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr6:109619400-109620200	Weak transcription	Fetal Thymus	thymus
34	chr6:109619400-109620200	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr6:109619400-109620400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr6:109619400-109620400	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr6:109619400-109620400	Weak transcription	Spleen	Spleen
38	chr6:109619400-109620800	Enhancers	Aorta	Aorta
39	chr6:109619400-109620800	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr6:109619400-109621200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr6:109619400-109621200	Weak transcription	Stomach Mucosa	stomach
42	chr6:109619400-109621400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr6:109619400-109621400	Weak transcription	Pancreas	Pancrea
44	chr6:109619400-109622800	Weak transcription	Brain Anterior Caudate	brain
45	chr6:109619400-109623200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr6:109619400-109624600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr6:109619400-109625000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
48	chr6:109619400-109629200	Weak transcription	Gastric	stomach
49	chr6:109619400-109638000	Weak transcription	HepG2	liver
50	chr6:109619600-109620000	Weak transcription	Primary monocytes fromperipheralblood	blood

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